←Back to structures
MG752970.1__AVH85244.1__RsoM2USA_316__00316
Bact-VirMG752970.1__AVH85244.1__RsoM2USA_316__00316
Identity
- Accession:
- MG752970 ↗
- Kingdom:
- phage
Quality
71.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 40-135
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a9nC00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.74 | 64.0 | 5.26e-01 | 94.8% | 57.5% |
| 3nwoA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.72 | 60.0 | 4.20e-01 | 89.6% | 79.3% |
| 8axjA01 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.72 | 62.0 | 5.48e-01 | 94.8% | 70.1% |
| 5irnA02 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.71 | 54.0 | 5.51e-01 | 80.2% | 100.0% |
| 2o2gA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.71 | 62.0 | 4.74e-01 | 95.8% | 78.2% |
| 2e55A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.66 | 51.0 | 4.01e-01 | 83.3% | 56.7% |
| 2qjwA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.66 | 54.0 | 4.46e-01 | 90.6% | 80.7% |
| 2yijB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.66 | 55.0 | 3.66e-01 | 91.7% | 44.8% |
| 1xttB00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 49.0 | 3.83e-01 | 81.2% | 56.7% |
| 2mwmA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.62 | 45.0 | 3.92e-01 | 77.1% | 92.1% |
| 3b85A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 44.0 | 3.54e-01 | 78.1% | 64.7% |
| 4nnaA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 47.0 | 3.36e-01 | 91.7% | 54.5% |
| 3ro6A02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.58 | 47.0 | 3.56e-01 | 88.5% | 43.8% |
| 3qllA00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.58 | 47.0 | 3.73e-01 | 90.6% | 54.9% |
| 5vxsA01 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.58 | 47.0 | 3.54e-01 | 92.7% | 49.8% |
| 3vmmA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 38.0 | 3.46e-01 | 84.4% | 51.1% |
| 1krhA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.55 | 42.0 | 3.78e-01 | 89.6% | 58.2% |
| 2zpaA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 41.0 | 3.69e-01 | 86.5% | 69.9% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.75 | 65.0 | 5.10e-01 | 93.8% | 59.9% | |
| 3932278 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.73 | 64.0 | 4.44e-01 | 96.9% | 37.1% |
| 3288384 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.66 | 55.0 | 3.87e-01 | 90.6% | 77.7% |
| 3420887 | 207.1.1.99 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At5g56370 | 0.66 | 57.0 | 4.09e-01 | 94.8% | 37.1% |
| 3380495 | 7579.1.1.95 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, Hydrolase_4 | 0.60 | 47.0 | 3.58e-01 | 84.4% | 86.0% |
| 3287430 | 7501.1.1.2 ↗ | a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › RibD_C | 0.60 | 45.0 | 3.57e-01 | 82.3% | 45.1% |
| 3969561 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.59 | 38.0 | 2.68e-01 | 78.1% | 20.7% |
| 1094856 | 2002.1.1.32 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Oxidored_FMN | 0.59 | 49.0 | 3.41e-01 | 93.8% | 62.1% |
| 3972058 | 7579.1.1.44 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 | 0.59 | 50.0 | 3.60e-01 | 92.7% | 69.6% |
| 419120 | 2002.1.1.174 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C | 0.58 | 47.0 | 3.61e-01 | 88.5% | 44.8% |
| 4954088 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.57 | 37.0 | 2.63e-01 | 78.1% | 22.5% |
| 5067003 | 2002.1.1.236 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHQS | 0.56 | 45.0 | 3.68e-01 | 88.5% | 52.1% |
| 4402315 | 2004.1.1.123 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_RecD | 0.55 | 41.0 | 3.38e-01 | 80.2% | 66.5% |
| 2095484 | 207.6.1.3 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › Peptidase_M10_C | 0.55 | 46.0 | 4.13e-01 | 94.8% | 100.0% |
| 5057830 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.54 | 42.0 | 3.46e-01 | 85.4% | 73.3% |
| 4972908 | 2007.1.1.15 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › DUF2124 | 0.53 | 43.0 | 3.71e-01 | 89.6% | 74.4% |
| 4986593 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.52 | 36.0 | 2.75e-01 | 79.2% | 29.6% |
| 4600926 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 41.0 | 3.36e-01 | 86.5% | 51.7% |
| 4441419 | 2484.1.1.7 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_S11 | 0.51 | 39.0 | 3.68e-01 | 83.3% | 86.7% |
D2
medium
residues 136-193