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MG752970.1__AVH85255.1__RsoM2USA_327__00327
Bact-VirMG752970.1__AVH85255.1__RsoM2USA_327__00327
Identity
- Accession:
- MG752970 ↗
- Kingdom:
- phage
Quality
86.0
mean pLDDT
Cluster
View cluster (11 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 62-216
Domain cluster:
rep: MG752970.1__AVH85259.1__RsoM2USA_331__00331__D13-187
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2p1mB02 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.66 | 55.0 | 3.72e-01 | 87.1% | 31.8% |
| 4f6cB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 45.0 | 3.41e-01 | 76.1% | 82.9% |
| 1odfA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 41.0 | 3.35e-01 | 71.6% | 87.5% |
| 3bz5A01 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.56 | 50.0 | 3.77e-01 | 97.4% | 45.9% |
| 3epnB01 | 3.20.20.540 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Radical SAM ThiC family, central domain | 0.55 | 43.0 | 3.50e-01 | 83.2% | 71.9% |
| 3b1fA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 40.0 | 3.88e-01 | 74.8% | 97.1% |
| 4ydsA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 40.0 | 3.54e-01 | 74.8% | 78.3% |
| 3ib5A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.53 | 39.0 | 3.00e-01 | 74.8% | 40.9% |
| 1t90A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.50 | 37.0 | 3.03e-01 | 75.5% | 91.4% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3454379 | 207.1.1.95 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 | 0.67 | 56.0 | 4.25e-01 | 89.0% | 48.0% |
| 3249126 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.64 | 54.0 | 3.78e-01 | 89.7% | 32.7% |
| 3250141 | 207.1.1.129 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_ComC | 0.63 | 52.0 | 3.91e-01 | 87.1% | 55.1% |
| 3403121 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.60 | 49.0 | 4.64e-01 | 87.7% | 77.4% |
| 4550840 | 2003.1.5.213 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS, tRNA_U5-meth_tr | 0.59 | 42.0 | 3.19e-01 | 71.6% | 47.6% |
| 4226862 | 2003.1.5.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr | 0.59 | 41.0 | 3.16e-01 | 71.6% | 47.5% |
| 4076202 | 2003.1.5.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr | 0.58 | 41.0 | 3.07e-01 | 72.3% | 45.5% |
| 4679950 | 2003.1.5.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Ubie_methyltran | 0.58 | 40.0 | 3.48e-01 | 71.6% | 92.7% |
| 4996332 | 2002.1.1.236 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHQS | 0.57 | 40.0 | 3.87e-01 | 85.2% | 62.9% |
| 4395676 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.57 | 47.0 | 4.23e-01 | 89.0% | 94.0% |
| 5022365 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.55 | 45.0 | 4.20e-01 | 86.5% | 94.2% |
| 2754806 | 2003.1.1.147 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › PDH_N, F420_oxidored | 0.55 | 40.0 | 3.84e-01 | 76.1% | 95.6% |
| 4941430 | 2002.1.1.44 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TatD_DNase | 0.54 | 43.0 | 3.72e-01 | 85.8% | 65.3% |
| 3961432 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.53 | 40.0 | 4.02e-01 | 77.4% | 82.6% |
| 4944576 | 2003.1.9.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF | 0.52 | 41.0 | 3.46e-01 | 83.2% | 83.8% |
| 1806527 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.52 | 32.0 | 3.18e-01 | 90.3% | 57.4% |
| 4612397 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.52 | 46.0 | 4.14e-01 | 98.1% | 98.2% |
| 3674655 | 2003.1.9.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins | 0.51 | 38.0 | 2.63e-01 | 78.1% | 91.9% |
| 4996059 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.51 | 37.0 | 3.82e-01 | 75.5% | 96.7% |
| 4951107 | 300.1.1.18 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle | 0.51 | 37.0 | 3.54e-01 | 74.8% | 96.6% |
| 3261651 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.50 | 41.0 | 3.32e-01 | 87.1% | 80.6% |
D2
medium
residues 1-61
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fnnA01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.72 | 60.0 | 5.06e-01 | 91.8% | 93.1% |
| 1g8pA02 | 1.10.8.80 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Magnesium chelatase subunit I, C-Terminal domain | 0.71 | 56.0 | 5.21e-01 | 86.9% | 89.7% |
| 1dj7A00 | 3.90.460.10 | Alpha Beta › Alpha-Beta Complex › Ferredoxin Thioredoxin Reductase › Ferredoxin thioredoxin reductase catalytic beta subunit | 0.65 | 54.0 | 4.52e-01 | 93.4% | 87.2% |
| 1nr6A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.64 | 53.0 | 3.15e-01 | 91.8% | 74.7% |
| 4chdA00 | 3.30.70.3510 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 50.0 | 3.97e-01 | 88.5% | 77.0% |
| 4njmA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 46.0 | 3.55e-01 | 77.0% | 92.0% |
| 3lkbA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 51.0 | 3.56e-01 | 91.8% | 95.8% |
| 3a8tA02 | 1.10.287.890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 0.61 | 41.0 | 3.41e-01 | 70.5% | 74.8% |
| 2vd5B02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.60 | 41.0 | 2.90e-01 | 72.1% | 57.5% |
| 7dfeA01 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.60 | 44.0 | 3.58e-01 | 82.0% | 57.5% |
| 1lj8A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.58 | 40.0 | 2.85e-01 | 73.8% | 54.6% |
| 2wocA00 | 1.10.4080.10 | Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 | 0.57 | 42.0 | 2.75e-01 | 80.3% | 24.4% |
| 7pweA02 | 3.90.460.10 | Alpha Beta › Alpha-Beta Complex › Ferredoxin Thioredoxin Reductase › Ferredoxin thioredoxin reductase catalytic beta subunit | 0.57 | 49.0 | 4.07e-01 | 96.7% | 82.4% |
| 3dxlA02 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.56 | 43.0 | 3.29e-01 | 86.9% | 52.0% |
| 7wd3A04 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.56 | 44.0 | 4.17e-01 | 93.4% | 87.2% |
| 6fjxA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.55 | 43.0 | 2.82e-01 | 85.2% | 42.4% |
| 2bjnB00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.53 | 38.0 | 2.95e-01 | 86.9% | 31.8% |
| 1e6vA01 | 3.90.390.10 | Alpha Beta › Alpha-Beta Complex › Methyl-coenzyme M Reductase; Chain A, domain 1 › Methyl-coenzyme M Reductase; Chain A, domain 1 | 0.53 | 35.0 | 3.02e-01 | 70.5% | 42.3% |
| 1ornA01 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.53 | 43.0 | 3.60e-01 | 93.4% | 51.8% |
| 2fzfA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 38.0 | 2.97e-01 | 80.3% | 84.0% |
| 3uh0A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.51 | 39.0 | 3.29e-01 | 91.8% | 85.5% |
| 2zw3A00 | 1.20.1440.80 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain | 0.50 | 38.0 | 2.86e-01 | 93.4% | 93.5% |
| 7yh2B01 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.50 | 36.0 | 2.84e-01 | 80.3% | 42.0% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3603531 | 148.1.3.17 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid | 0.73 | 55.0 | 5.08e-01 | 82.0% | 95.0% |
| 3285896 | 148.1.3.20 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 | 0.70 | 56.0 | 4.79e-01 | 88.5% | 86.0% |
| 4971995 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.68 | 54.0 | 4.82e-01 | 88.5% | 94.4% |
| 4965582 | 4953.2.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › Lid-like insertion of Propionyl-CoA synthase (PCS) ligase domain › Lid-like insertion of Propionyl-CoA synthase (PCS) ligase domain | 0.67 | 51.0 | 4.57e-01 | 85.2% | 82.2% |
| 3219192 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.66 | 48.0 | 4.37e-01 | 78.7% | 75.0% |
| 3462661 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.65 | 54.0 | 3.12e-01 | 90.2% | 69.4% |
| 3661352 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.65 | 53.0 | 3.19e-01 | 90.2% | 70.4% |
| 4935629 | 911.1.1.1 ↗ | few secondary structure elements › Ferredoxin thioredoxin reductase (FTR), catalytic beta chain › Ferredoxin thioredoxin reductase (FTR), catalytic beta chain › Ferredoxin thioredoxin reductase (FTR), catalytic beta chain › FeThRed_B | 0.65 | 52.0 | 4.61e-01 | 90.2% | 98.9% |
| 5004111 | 911.1.1.1 ↗ | few secondary structure elements › Ferredoxin thioredoxin reductase (FTR), catalytic beta chain › Ferredoxin thioredoxin reductase (FTR), catalytic beta chain › Ferredoxin thioredoxin reductase (FTR), catalytic beta chain › FeThRed_B | 0.64 | 50.0 | 4.49e-01 | 85.2% | 100.0% |
| 1144173 | 3232.1.1.3 ↗ | alpha arrays › PB2 '627' domain-related › PB2 '627' domain-related › Polymerase basic protein 2 (PB2) '627' domain › PB2_627-dom | 0.64 | 50.0 | 3.97e-01 | 88.5% | 77.0% |
| None | — | 0.64 | 50.0 | 3.07e-01 | 88.5% | 35.8% | |
| 4999074 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.64 | 48.0 | 4.56e-01 | 83.6% | 86.7% |
| 3653538 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.63 | 52.0 | 3.06e-01 | 90.2% | 66.7% |
| 3270471 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.60 | 49.0 | 2.92e-01 | 90.2% | 75.6% |
| 5052942 | 911.1.1.1 ↗ | few secondary structure elements › Ferredoxin thioredoxin reductase (FTR), catalytic beta chain › Ferredoxin thioredoxin reductase (FTR), catalytic beta chain › Ferredoxin thioredoxin reductase (FTR), catalytic beta chain › FeThRed_B | 0.60 | 51.0 | 4.22e-01 | 96.7% | 80.9% |
| 3947908 | 4275.1.1.1 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_connect_1 | 0.59 | 49.0 | 4.39e-01 | 95.1% | 100.0% |
| 3319851 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.58 | 47.0 | 3.24e-01 | 88.5% | 63.3% |
| 4971318 | 148.1.3.20 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 | 0.57 | 44.0 | 3.61e-01 | 88.5% | 52.0% |
| 3712560 | 148.1.3.16 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Dynein_AAA_lid | 0.57 | 44.0 | 3.38e-01 | 91.8% | 75.8% |
| 3203333 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.56 | 41.0 | 3.95e-01 | 80.3% | 87.1% |
| 3898389 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 37.0 | 3.17e-01 | 70.5% | 62.9% |
| 4430761 | 3804.1.1.1 ↗ | alpha bundles › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › Cas13a_endoribonuclease | 0.55 | 40.0 | 2.99e-01 | 78.7% | 35.2% |
| 4974198 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.54 | 40.0 | 3.11e-01 | 85.2% | 32.7% |
| 3724507 | 3924.1.1.0 ↗ | alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 | 0.54 | 44.0 | 2.91e-01 | 95.1% | 99.0% |
| 4647441 | 229.1.1.6 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › PEX6_4th | 0.54 | 40.0 | 3.27e-01 | 83.6% | 93.6% |
| 3387611 | 102.1.2.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD,EndIII_4Fe-2S | 0.53 | 44.0 | 3.19e-01 | 98.4% | 56.6% |
| 1839965 | 397.8.1.1 ↗ | few secondary structure elements › Toxic hairpin › GASA/snakin › GASA/snakin › GASA | 0.53 | 40.0 | 4.00e-01 | 85.2% | 100.0% |
| 3472447 | 541.1.1.11 ↗ | alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › PF30489 | 0.52 | 36.0 | 3.77e-01 | 85.2% | 90.0% |
| 5063050 | 3352.1.1.1 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3 | 0.51 | 41.0 | 2.51e-01 | 95.1% | 70.5% |
| 3435502 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.50 | 41.0 | 2.45e-01 | 93.4% | 65.0% |