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MG752970.1__AVH85265.1__RsoM2USA_337__00337

Bact-Vir

MG752970.1__AVH85265.1__RsoM2USA_337__00337

Identity

Accession:
MG752970 ↗
Kingdom:
phage

Quality

81.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 55-182
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u0jA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.71 55.0 4.48e-01 99.2% 44.8%
3b82B00 3.90.175.10 Alpha Beta › Alpha-Beta Complex › Diphtheria Toxin; domain 1 › Diphtheria Toxin, domain 1 0.60 54.0 4.55e-01 96.1% 68.6%
1rhfA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 28.0 3.34e-01 97.7% 67.1%
3mtjA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 27.0 3.41e-01 87.5% 76.3%
3mwbB03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 29.0 3.33e-01 89.8% 72.6%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
183506 237.1.1.8 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.71 55.0 4.47e-01 99.2% 44.1%
4563308 237.1.1.8 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.61 54.0 4.54e-01 97.7% 58.2%
5082578 237.1.1.16 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › DUF2441 0.57 48.0 4.29e-01 89.8% 100.0%
5053714 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 29.0 2.90e-01 88.3% 48.1%
3962952 304.8.1.1 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C 0.53 29.0 3.26e-01 87.5% 68.0%
3184298 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.52 26.0 3.22e-01 84.4% 77.3%
D2 medium residues 1-54
PDB
D3 medium residues 185-237
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a1nA02 6.10.250.1250 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.63 48.0 4.88e-01 94.3% 90.0%
2xheA04 1.25.40.60 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 50.0 3.87e-01 98.1% 82.2%
2k8oA00 1.20.5.2120 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.52 35.0 3.43e-01 71.7% 61.7%
2mjfB00 1.20.1440.260 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.50 39.0 3.38e-01 92.5% 68.4%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1712010 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 56.0 5.68e-01 92.5% 100.0%
5083438 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.64 52.0 3.68e-01 90.6% 38.8%
3826246 3291.1.1.229 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF629 0.52 38.0 3.02e-01 81.1% 46.4%
D4 medium residues 243-334
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3thoB01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.64 50.0 3.63e-01 100.0% 30.4%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 52.0 4.60e-01 94.6% 82.1%
3dorA03 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.61 47.0 3.45e-01 100.0% 30.3%
3l50A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.60 38.0 3.42e-01 85.9% 43.4%
6rftA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 40.0 3.63e-01 94.6% 49.6%
3r1kA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 42.0 3.75e-01 100.0% 51.9%
5u89A01 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.57 32.0 3.23e-01 84.8% 54.3%
4xeqB00 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.57 42.0 2.93e-01 77.2% 83.6%
2b3uB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 41.0 3.41e-01 100.0% 42.1%
6n39A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 45.0 3.50e-01 85.9% 46.6%
4pfiA00 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.56 41.0 2.91e-01 78.3% 86.4%
3ju1B00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.55 49.0 3.31e-01 100.0% 42.2%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 32.0 3.39e-01 85.9% 66.7%
7k7yG02 1.20.1120.10 Mainly Alpha › Up-down Bundle › "Clostridium botulinum neurotoxin B, ""coiled-coil"" domain" › "Clostridium botulinum neurotoxin b, ""coiled-coil"" domain" 0.54 47.0 3.11e-01 95.7% 45.5%
3h1qA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 47.0 4.42e-01 100.0% 87.0%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 43.0 3.33e-01 90.2% 94.6%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.53 25.0 2.89e-01 89.1% 59.1%
2ychA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 47.0 4.33e-01 100.0% 83.5%
3olqA00 3.40.50.12370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 42.0 2.97e-01 88.0% 30.1%
2vsqA06 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.52 31.0 2.98e-01 84.8% 50.5%
1amuA04 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.51 30.0 3.01e-01 85.9% 56.2%
3fvyA03 3.30.70.2600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 28.0 3.10e-01 84.8% 66.7%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3558463 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.62 44.0 2.96e-01 73.9% 61.1%
3600020 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 54.0 3.46e-01 100.0% 26.9%
3813343 246.2.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.61 52.0 3.85e-01 100.0% 36.3%
3964769 2008.1.1.78 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_endonuc 0.58 39.0 3.21e-01 88.0% 35.6%
3680941 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 43.0 4.12e-01 100.0% 67.3%
3282934 2486.1.1.1 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 0.57 51.0 3.69e-01 98.9% 54.8%
3305761 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.57 45.0 3.81e-01 84.8% 56.1%
3637417 4099.1.1.10 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.56 39.0 2.96e-01 71.7% 46.7%
3325528 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.56 45.0 3.70e-01 85.9% 51.2%
4458233 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.56 41.0 2.71e-01 76.1% 52.6%
4621615 246.1.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.55 41.0 2.93e-01 88.0% 25.2%
None 0.55 39.0 3.28e-01 100.0% 41.2%
3730963 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.55 48.0 3.14e-01 98.9% 52.0%
3681523 7579.1.1.14 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.54 48.0 3.19e-01 100.0% 28.2%
4951792 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.54 38.0 2.82e-01 75.0% 62.4%
5048618 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 42.0 3.81e-01 91.3% 60.7%
1099098 2486.1.1.7 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S41 0.53 48.0 3.28e-01 100.0% 40.3%
3829518 2486.1.1.7 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S41 0.53 46.0 3.38e-01 95.7% 67.4%
3405177 2496.1.1.2 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS 0.53 47.0 4.12e-01 98.9% 74.1%
3618417 7529.1.1.11 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › DUF2362 0.52 47.0 3.40e-01 100.0% 36.2%
3201807 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 42.0 3.53e-01 100.0% 50.6%
4521582 2486.1.1.7 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S41 0.52 47.0 3.18e-01 100.0% 51.9%
3450582 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.52 43.0 3.86e-01 90.2% 74.6%
3872321 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 46.0 3.11e-01 97.8% 69.4%
4394721 2496.1.1.1 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › CRAL_TRIO 0.52 45.0 3.65e-01 100.0% 53.2%
3470605 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.52 41.0 3.52e-01 85.9% 59.3%
3988694 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.52 31.0 3.18e-01 85.9% 58.9%
4947002 327.18.1.0 a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A 0.51 29.0 3.36e-01 83.7% 76.8%
5001122 2004.1.1.194 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C_2 0.51 45.0 3.76e-01 100.0% 92.7%
None 0.51 44.0 3.15e-01 100.0% 55.0%
3621180 327.5.1.2 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.50 30.0 2.89e-01 85.9% 51.4%
D5 medium residues 347-387
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dd9A03 1.20.50.20 Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle 0.87 71.0 6.20e-01 90.2% 61.0%
4hkaA02 1.10.287.3810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.83 74.0 6.87e-01 100.0% 80.4%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.75 65.0 5.53e-01 100.0% 64.7%
7vevA01 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.74 60.0 3.75e-01 97.6% 15.7%
2r4gA02 1.10.10.1970 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TERT catalytic subunit-like 0.72 57.0 4.98e-01 100.0% 57.8%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.72 60.0 5.03e-01 97.6% 93.2%
1w36F02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 49.0 3.69e-01 75.6% 30.0%
3dteA01 1.10.10.2910 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.68 56.0 4.13e-01 97.6% 90.6%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 58.0 4.92e-01 100.0% 100.0%
3q2eA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.66 52.0 4.06e-01 100.0% 39.3%
2y4tA02 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.64 52.0 4.98e-01 100.0% 94.2%
3t4rA00 1.20.120.1590 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.61 45.0 4.02e-01 95.1% 51.4%
4gf0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 45.0 3.53e-01 100.0% 37.2%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3737278 109.4.1.1152 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_Nup120 0.88 67.0 4.30e-01 92.7% 19.4%
3603734 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.83 65.0 4.48e-01 97.6% 26.1%
3258150 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.78 64.0 6.47e-01 97.6% 97.5%
3421107 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.76 62.0 6.15e-01 100.0% 91.1%
3269518 102.1.1.30 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.73 60.0 5.12e-01 100.0% 55.7%
4127368 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.72 61.0 5.78e-01 100.0% 80.0%
5016790 3407.1.1.3 mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_N 0.66 60.0 4.19e-01 100.0% 69.2%
3416865 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.64 55.0 5.58e-01 100.0% 100.0%