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MG752970.1__AVH85324.1__RsoM2USA_396__00396
Bact-VirMG752970.1__AVH85324.1__RsoM2USA_396__00396
Identity
- Accession:
- MG752970 ↗
- Kingdom:
- phage
Quality
69.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-72
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.85 | 39.0 | 3.86e-01 | 93.0% | 44.1% |
| 2fcwA00 | 1.20.81.10 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain | 0.73 | 55.0 | 4.51e-01 | 82.5% | 96.2% |
| 1e1dA02 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.72 | 62.0 | 5.51e-01 | 100.0% | 90.5% |
| 1zhcA00 | 6.10.280.50 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 50.0 | 4.54e-01 | 75.4% | 88.2% |
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.67 | 43.0 | 3.71e-01 | 73.7% | 43.0% |
| 7y11B01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.66 | 50.0 | 4.84e-01 | 82.5% | 79.4% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.64 | 45.0 | 3.44e-01 | 75.4% | 70.3% |
| 1t72A02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.64 | 58.0 | 4.80e-01 | 100.0% | 96.9% |
| 6h7bA01 | 1.10.1900.10 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein | 0.63 | 48.0 | 4.50e-01 | 87.7% | 67.6% |
| 3mgdB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 49.0 | 3.68e-01 | 96.5% | 82.9% |
| 2e9xA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 50.0 | 3.74e-01 | 91.2% | 67.2% |
| 3ic9A02 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.58 | 41.0 | 3.87e-01 | 75.4% | 92.9% |
| 2q0iA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 49.0 | 3.12e-01 | 100.0% | 28.0% |
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.55 | 44.0 | 3.49e-01 | 87.7% | 61.9% |
| 3jcuZ00 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.55 | 38.0 | 3.74e-01 | 71.9% | 91.8% |
| 4gf0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 42.0 | 3.48e-01 | 91.2% | 76.1% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.75 | 60.0 | 3.82e-01 | 87.7% | 32.6% | |
| 4003837 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.74 | 53.0 | 4.29e-01 | 87.7% | 43.0% |
| 4991900 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.70 | 59.0 | 3.57e-01 | 93.0% | 45.7% |
| 3241303 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.70 | 60.0 | 5.41e-01 | 100.0% | 98.8% |
| 3699599 | 6157.1.1.2 ↗ | alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 › GCP_N_terminal | 0.69 | 58.0 | 3.58e-01 | 100.0% | 40.0% |
| 3187980 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.64 | 43.0 | 3.63e-01 | 70.2% | 62.2% |
| 1248123 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.62 | 42.0 | 3.13e-01 | 70.2% | 44.6% |
| 3906467 | 1008.1.1.106 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › CSN5_C | 0.62 | 42.0 | 3.48e-01 | 70.2% | 60.0% |
| 3279027 | 150.8.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE › PPE | 0.62 | 48.0 | 3.48e-01 | 89.5% | 88.0% |
| 4997774 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.59 | 46.0 | 3.49e-01 | 84.2% | 74.1% |
| 3785916 | 3559.1.1.40 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Bap31 | 0.59 | 50.0 | 4.12e-01 | 98.2% | 90.0% |
| 4026843 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.58 | 44.0 | 4.09e-01 | 82.5% | 65.7% |
| 3498989 | 219.1.1.9 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 | 0.55 | 45.0 | 2.90e-01 | 91.2% | 55.6% |