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MG752970.1__AVH85343.1__RsoM2USA_415__00415

Bact-Vir

MG752970.1__AVH85343.1__RsoM2USA_415__00415

Identity

Accession:
MG752970 ↗
Kingdom:
phage

Quality

74.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ralstonia_phage_RsoM2USA

TaxID: 2070027

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 171-287
PDB
Domain cluster: rep: ON755184.1__UVF61518.1__SEA_DALANDE_105__00105__D152-256
D2 medium residues 16-70
PDB
Domain cluster: rep: NC_031125.1__YP_009292659.1__BIZ66_gp19__00019__D752-813
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hutA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.68 51.0 3.69e-01 80.0% 91.3%
4kv7A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 51.0 3.71e-01 87.3% 84.7%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 44.0 4.44e-01 80.0% 92.9%
3m6wA03 2.30.130.60 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › 0.58 43.0 4.10e-01 81.8% 92.5%
4evqA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 44.0 3.21e-01 83.6% 81.0%
6r8gB02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.56 45.0 3.23e-01 89.1% 71.8%
2gk4A00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.55 42.0 2.89e-01 87.3% 84.7%
2kksA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 43.0 3.36e-01 94.5% 67.1%
1g4fA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.55 39.0 3.41e-01 76.4% 57.0%
3wknF00 6.20.50.120 Special › Other non-globular › N-terminal domain of TfIIb › 0.53 37.0 4.04e-01 72.7% 95.7%
4hg1A00 3.40.1580.30 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › Domain of unknown function (DUF5066) 0.53 44.0 3.04e-01 98.2% 53.2%
1b8pA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.53 42.0 3.09e-01 92.7% 71.5%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.61e-01 72.7% 75.0%
1s7jA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 40.0 3.26e-01 94.5% 93.9%
1ib6A02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.52 40.0 2.97e-01 89.1% 69.9%
1ym5A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 40.0 3.21e-01 94.5% 80.1%
2zyzC00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 35.0 2.95e-01 70.9% 57.3%
3uboB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 42.0 2.69e-01 100.0% 79.2%
3pvnA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 2.92e-01 96.4% 68.0%
6hjfA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 40.0 3.02e-01 98.2% 73.9%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081065 3761.1.1.5 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › PF26696 0.80 62.0 6.75e-01 81.8% 100.0%
3251055 3856.1.2.1 ↗ beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta 0.69 52.0 4.83e-01 81.8% 100.0%
3908567 391.1.1.13 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › VWC2L_2nd 0.66 42.0 4.21e-01 72.7% 63.6%
3528046 391.1.1.2 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › VWC 0.61 42.0 4.15e-01 80.0% 66.7%
3212241 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.61 47.0 3.81e-01 90.9% 65.8%
4576540 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.61 45.0 4.41e-01 80.0% 93.3%
3938726 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.60 47.0 3.99e-01 92.7% 68.6%
3509350 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.60 49.0 3.80e-01 94.5% 59.7%
4316169 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.60 43.0 4.13e-01 76.4% 92.3%
4398407 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.60 45.0 4.32e-01 83.6% 93.8%
5051423 2.1.1.67 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ten1_2 0.59 43.0 3.65e-01 83.6% 76.2%
1155477 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.57 43.0 3.90e-01 85.5% 81.0%
3565842 391.1.2.17 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC, VWC2L_2nd 0.56 39.0 3.28e-01 87.3% 37.4%
3755498 391.1.1.24 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › VWC, VWC2L_2nd 0.55 38.0 3.18e-01 89.1% 37.4%