←Back to structures

MG765279.2__AUV60089.1__X__00063

Bact-Vir

MG765279.2__AUV60089.1__X__00063

Identity

Accession:
MG765279 ↗
Kingdom:
phage

Quality

69.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Harbinvirus› Lactobacillus_phage_Semele

TaxID: 2079433

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-110
PDB
Domain cluster: rep: NC_047948.1__YP_009799981.1__HOT02_gp141__00140__D1-84
D2 medium residues 113-175
PDB
Domain cluster: rep: BML_coassembly_scaffold_37_prodigal-single.1__X__X__00338__D232-284
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 65.0 6.38e-01 88.9% 79.4%
3p42A03 3.10.560.10 Alpha Beta › Roll › Outer membrane lipoprotein wza fold like › Outer membrane lipoprotein wza domain like 0.64 37.0 3.51e-01 84.1% 48.6%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.61 42.0 4.29e-01 98.4% 75.4%
3fmaA00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.60 47.0 4.39e-01 100.0% 67.9%
4dt4A01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 44.0 4.17e-01 87.3% 91.1%
6ixwB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 48.0 3.69e-01 100.0% 64.8%
3jxvA02 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 42.0 3.58e-01 87.3% 74.4%
6fwvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 3.88e-01 100.0% 58.9%
2mm0A00 2.10.70.110 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.56 43.0 4.37e-01 87.3% 96.9%
2kfwA01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 42.0 3.61e-01 87.3% 70.8%
2x5pA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.54e-01 100.0% 49.0%
3rkgA01 2.40.128.330 Mainly Beta › Beta Barrel › Lipocalin › 0.55 45.0 4.01e-01 93.7% 87.2%
1cidA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.78e-01 100.0% 67.6%
3f1sB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 41.0 3.66e-01 98.4% 57.0%
3gtyX02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.53 41.0 3.81e-01 87.3% 77.4%
6mw4A01 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.22e-01 87.3% 54.6%
2j8aA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 40.0 3.63e-01 87.3% 100.0%
5hccB02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.50 41.0 3.62e-01 95.2% 60.0%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2876 101.1.14.2 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.82 65.0 6.35e-01 88.9% 78.3%
4384880 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.78 62.0 5.59e-01 85.7% 65.9%
4414927 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.72 59.0 5.79e-01 90.5% 84.1%
4946799 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.67 42.0 3.48e-01 87.3% 35.5%
3933682 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.66 47.0 3.91e-01 98.4% 41.7%
3805835 4121.1.1.2 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.64 55.0 3.68e-01 100.0% 38.5%
3930342 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.63 44.0 4.66e-01 100.0% 85.5%
3368299 4121.1.1.2 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.62 52.0 3.50e-01 100.0% 47.1%
3296049 4121.1.1.2 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.61 51.0 3.62e-01 100.0% 38.8%
3266341 4121.1.1.2 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.61 52.0 3.57e-01 100.0% 45.6%
4594988 11.1.1.608 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail 0.57 40.0 3.94e-01 95.2% 67.1%
3231131 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 46.0 3.86e-01 90.5% 72.4%
5001286 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 3.68e-01 98.4% 55.8%
3881492 109.4.1.411 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TTC3_DZIP3_dom 0.53 43.0 2.89e-01 100.0% 22.6%
3264438 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.51 44.0 3.00e-01 100.0% 86.3%
3258216 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.51 43.0 3.05e-01 100.0% 88.0%
3440200 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.50 42.0 3.12e-01 93.7% 83.4%
5036180 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.50 41.0 3.67e-01 93.7% 80.0%
3284156 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 37.0 3.48e-01 84.1% 98.8%
3839138 2004.1.1.36 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.50 44.0 2.94e-01 100.0% 37.3%
D3 medium residues 237-274
PDB