←Back to structures

MG775042.2__AVX48077.1__CrRp3_cds53__00053

Bact-Vir

MG775042.2__AVX48077.1__CrRp3_cds53__00053

Identity

Accession:
MG775042 ↗
Kingdom:
phage

Quality

92.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autosignataviridae› Rodentiumvirus› Citrobacter_phage_vB_CroP_CrRp3

TaxID: 2079275

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 80-188
PDB
Domain cluster: rep: NC_070840.1__YP_010656702.1__PP651_gp01__00001__D749-845
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00940.25 best RNA_pol 77.5 1.40e-21 81.7% 16.9%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1aroP03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.84 70.0 6.16e-01 87.2% 71.3%
4h3tA02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.62 45.0 4.16e-01 78.9% 58.9%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.59 37.0 3.95e-01 76.1% 74.7%
1pulA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 32.0 3.32e-01 87.2% 57.3%
3go9A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 50.0 3.95e-01 97.2% 85.3%
4l3tA03 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 46.0 3.64e-01 97.2% 75.2%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.76e-01 87.2% 78.1%
5n13A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.51 33.0 3.33e-01 89.0% 64.8%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3207626 304.48.1.11 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.97 74.0 8.43e-01 93.6% 100.0%
3690781 304.48.1.11 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.96 65.0 6.98e-01 70.6% 78.9%
3868177 304.48.1.11 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.94 90.0 7.65e-01 98.2% 77.5%
3714105 304.48.1.11 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.94 91.0 7.20e-01 100.0% 58.8%
3596109 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.94 83.0 7.75e-01 91.7% 80.8%
3245966 304.48.1.11 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.92 83.0 7.45e-01 92.7% 82.1%
4220398 304.48.1.11 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.91 87.0 7.27e-01 99.1% 75.9%
4345162 304.48.1.11 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.91 82.0 7.06e-01 94.5% 84.4%
4261006 304.48.1.11 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.88 76.0 6.65e-01 90.8% 83.9%
4626202 304.48.1.11 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.84 74.0 7.41e-01 93.6% 90.9%
2580914 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.66 47.0 4.72e-01 98.2% 72.1%
3245958 101.1.2.12 ↗ alpha arrays › HTH › HTH › winged helix domain › DEP 0.62 42.0 4.23e-01 100.0% 68.2%
3405108 108.2.1.1 ↗ alpha arrays › EF-hand › Insect pheromone/odorant-binding proteins › Insect pheromone/odorant-binding proteins › PBP_GOBP 0.55 49.0 4.68e-01 99.1% 100.0%
5035680 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 41.0 3.47e-01 92.7% 48.3%
4890967 2004.1.1.182 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_8 0.54 37.0 3.08e-01 89.0% 39.1%
4934179 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.54 46.0 3.60e-01 94.5% 89.0%
3284225 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.53 27.0 3.13e-01 84.4% 65.0%
3484869 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.53 46.0 3.69e-01 100.0% 74.5%
3962535 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 27.0 2.96e-01 84.4% 57.8%
4650319 7011.1.1.1 ↗ alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › FTSW_RODA_SPOVE 0.51 46.0 3.20e-01 100.0% 94.3%
3837979 3799.1.1.0 ↗ alpha bundles › SabA N-terminal extracellular adhesion domain › SabA N-terminal extracellular adhesion domain › SabA N-terminal extracellular adhesion domain 0.51 43.0 3.35e-01 96.3% 70.4%
3948609 7011.1.1.1 ↗ alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › FTSW_RODA_SPOVE 0.51 45.0 3.15e-01 100.0% 91.4%