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MG788324.1__AVH85810.1__X__00067
Bact-VirMG788324.1__AVH85810.1__X__00067
Identity
- Accession:
- MG788324 ↗
- Kingdom:
- phage
Quality
94.6
mean pLDDT
Cluster
View cluster (26 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-51_110-161
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.66 | 52.0 | 5.32e-01 | 84.5% | 87.3% |
| 1vsgA02 | 1.10.470.10 | Mainly Alpha › Orthogonal Bundle › Variant Surface Glycoprotein, subunit A; domain 2 › Variant Surface Glycoprotein, subunit A, domain 2 | 0.64 | 48.0 | 4.24e-01 | 80.6% | 83.0% |
| 3aqtA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.63 | 46.0 | 3.72e-01 | 75.7% | 56.4% |
| 2pfdA03 | 1.20.120.680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle | 0.63 | 51.0 | 4.13e-01 | 89.3% | 85.2% |
| 3ajfA00 | 1.20.1440.190 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tenuivirus movement protein | 0.61 | 48.0 | 5.01e-01 | 90.3% | 93.5% |
| 2nx4C00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 45.0 | 3.72e-01 | 77.7% | 64.2% |
| 1v9vA01 | 1.20.1480.20 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like | 0.61 | 48.0 | 4.95e-01 | 83.5% | 89.5% |
| 1werA02 | 1.10.506.10 | Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 | 0.60 | 53.0 | 4.74e-01 | 99.0% | 98.6% |
| 2juaA00 | 1.20.1480.30 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Designed four-helix bundle protein | 0.60 | 46.0 | 4.67e-01 | 83.5% | 88.2% |
| 1tu9A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 49.0 | 4.52e-01 | 90.3% | 99.2% |
| 4x28A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.59 | 45.0 | 3.91e-01 | 82.5% | 73.3% |
| 3o60A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 47.0 | 3.91e-01 | 87.4% | 86.3% |
| 1gcvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 48.0 | 4.42e-01 | 93.2% | 100.0% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.57 | 42.0 | 4.50e-01 | 82.5% | 92.0% |
| 2hfiA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.56 | 39.0 | 3.75e-01 | 72.8% | 87.0% |
| 2pybA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 46.0 | 4.01e-01 | 90.3% | 91.4% |
| 6tblB01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.54 | 37.0 | 3.66e-01 | 81.6% | 65.8% |
| 1ng6A01 | 1.10.1510.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain | 0.54 | 41.0 | 4.32e-01 | 80.6% | 100.0% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.54 | 36.0 | 3.93e-01 | 82.5% | 84.7% |
| 4hfvA01 | 1.20.1440.330 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.53 | 44.0 | 4.27e-01 | 91.3% | 97.4% |
| 2rbdA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 47.0 | 4.04e-01 | 92.2% | 86.7% |
| 4etrB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 45.0 | 4.30e-01 | 92.2% | 89.3% |
| 5ffdA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 45.0 | 4.04e-01 | 92.2% | 88.3% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 37.0 | 3.75e-01 | 74.8% | 76.5% |
| 1t9xA05 | 1.20.1640.10 | Mainly Alpha › Up-down Bundle › Multidrug efflux transporter AcrB transmembrane fold › Multidrug efflux transporter AcrB transmembrane domain | 0.51 | 41.0 | 3.25e-01 | 89.3% | 93.7% |
| 3eabE00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.50 | 36.0 | 3.90e-01 | 74.8% | 89.5% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3419996 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.67 | 58.0 | 5.01e-01 | 97.1% | 77.0% |
| 5038471 | 633.21.1.1 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › DUF326 | 0.63 | 52.0 | 5.03e-01 | 87.4% | 84.3% |
| 4863592 | 633.21.1.1 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › DUF326 | 0.63 | 51.0 | 5.04e-01 | 87.4% | 91.0% |
| 3920202 | 601.16.1.15 ↗ | alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › CRIC_ras_sig | 0.62 | 43.0 | 3.93e-01 | 71.8% | 85.7% |
| 4959890 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 51.0 | 4.07e-01 | 90.3% | 45.7% |
| 3986322 | 4270.1.1.0 ↗ | alpha bundles › N-terminal domain of Hypothetical protein MPN330 › N-terminal domain of Hypothetical protein MPN330 › N-terminal domain of Hypothetical protein MPN330 | 0.60 | 43.0 | 4.77e-01 | 94.2% | 98.8% |
| 3931056 | 633.16.1.0 ↗ | alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like | 0.58 | 45.0 | 4.56e-01 | 82.5% | 82.9% |
| 3944793 | 601.19.1.41 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › YicC-like_C | 0.58 | 46.0 | 4.02e-01 | 84.5% | 79.4% |
| 3726017 | 633.15.1.1 ↗ | alpha bundles › Bromodomain-like › alpha-ketoacid dehydrogenase kinase-N › alpha-ketoacid dehydrogenase kinase-N › BCDHK_Adom3 | 0.58 | 46.0 | 3.89e-01 | 88.3% | 64.3% |
| 3737807 | 5059.1.1.4 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Nuc_sug_transp | 0.56 | 47.0 | 3.38e-01 | 93.2% | 80.9% |
| 3449442 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.56 | 44.0 | 4.39e-01 | 82.5% | 88.6% |
| 4027684 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 40.0 | 3.03e-01 | 74.8% | 67.8% |
| 3970215 | 602.3.1.0 ↗ | alpha arrays › L-aspartase middle domain-like › TssK neck domain › TssK neck domain | 0.55 | 43.0 | 4.15e-01 | 83.5% | 92.5% |
| 3970799 | 602.3.1.0 ↗ | alpha arrays › L-aspartase middle domain-like › TssK neck domain › TssK neck domain | 0.55 | 43.0 | 4.15e-01 | 83.5% | 92.5% |
| 5016927 | 3843.1.1.39 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DUF6198 | 0.55 | 46.0 | 3.92e-01 | 96.1% | 99.5% |
| 3289554 | 106.1.1.11 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N | 0.55 | 43.0 | 4.17e-01 | 87.4% | 99.2% |
| 2390433 | 602.3.1.1 ↗ | alpha arrays › L-aspartase middle domain-like › TssK neck domain › TssK neck domain › T6SS_VasE | 0.54 | 42.0 | 4.01e-01 | 84.5% | 89.5% |
| 2512963 | 633.21.1.1 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › DUF326 | 0.53 | 47.0 | 4.34e-01 | 99.0% | 87.9% |
| 3738700 | 109.4.1.1378 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF2428, TPR_Trm732_C | 0.51 | 40.0 | 3.04e-01 | 82.5% | 40.8% |
| 3967618 | 604.5.1.33 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › FUSC | 0.51 | 45.0 | 3.74e-01 | 100.0% | 96.8% |
| 2089712 | 602.3.1.1 ↗ | alpha arrays › L-aspartase middle domain-like › TssK neck domain › TssK neck domain › T6SS_VasE | 0.51 | 40.0 | 3.73e-01 | 85.4% | 84.7% |
| 4991359 | 150.1.2.5 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › TENA_THI-4 | 0.51 | 42.0 | 3.43e-01 | 92.2% | 88.3% |
| 3671842 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 41.0 | 3.39e-01 | 88.3% | 53.7% |
D2
medium
residues 52-109
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u04A03 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.68 | 55.0 | 3.82e-01 | 86.2% | 69.1% |
| 2f2hA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 40.0 | 2.49e-01 | 72.4% | 24.3% |
| 7apeB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 38.0 | 2.71e-01 | 100.0% | 25.4% |
| 4s1pA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.51 | 45.0 | 3.18e-01 | 100.0% | 45.1% |
| 2zjgA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.51 | 44.0 | 2.91e-01 | 100.0% | 68.8% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4029829 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.73 | 44.0 | 3.54e-01 | 96.6% | 31.8% |
| 3281175 | 222.1.1.10 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 | 0.59 | 43.0 | 3.53e-01 | 91.4% | 40.9% |
| 3959960 | 222.1.1.10 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 | 0.57 | 44.0 | 3.56e-01 | 91.4% | 43.6% |
| 4927138 | 5049.1.1.1 ↗ | alpha complex topology › Ammonium transporter-related › Ammonium transporter-related › Ammonium transporter › Ammonium_transp | 0.50 | 43.0 | 2.58e-01 | 100.0% | 12.6% |