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MG812493.1__AVJ48429.1__SEA_NUEVOMUNDO_161__00154
Bact-VirMG812493.1__AVJ48429.1__SEA_NUEVOMUNDO_161__00154
Identity
- Accession:
- MG812493 ↗
- Kingdom:
- phage
Quality
90.6
mean pLDDT
Taxonomy
TaxID: 2079573
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-39
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vq0A02 | 3.90.1280.10 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like | 0.70 | 53.0 | 4.77e-01 | 87.2% | 68.4% |
| 2ostD00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.67 | 55.0 | 3.91e-01 | 97.4% | 27.8% |
| 3wt0A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.66 | 48.0 | 3.24e-01 | 82.1% | 66.3% |
| 2w8mA00 | 3.40.1350.50 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › D212 PD-(D/E)XK nuclease, catalytic motif | 0.64 | 49.0 | 3.43e-01 | 97.4% | 35.8% |
| 4xr7F02 | 1.10.287.3700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 46.0 | 3.60e-01 | 84.6% | 41.1% |
| 4bwxA03 | 1.10.287.3700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 44.0 | 3.58e-01 | 84.6% | 47.5% |
| 2f7lA02 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.58 | 40.0 | 2.90e-01 | 71.8% | 23.0% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.58 | 46.0 | 2.98e-01 | 100.0% | 36.8% |
| 5tuuA00 | 1.20.140.80 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Transcription factor DP | 0.58 | 45.0 | 3.09e-01 | 84.6% | 45.1% |
| 2qrdE01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.57 | 44.0 | 2.98e-01 | 94.9% | 35.6% |
| 5r0dB01 | 2.60.34.20 | Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › | 0.57 | 47.0 | 3.27e-01 | 97.4% | 53.8% |
| 4frfA00 | 3.30.470.160 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase | 0.56 | 42.0 | 2.81e-01 | 97.4% | 22.0% |
| 3weeB03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.56 | 42.0 | 3.13e-01 | 84.6% | 52.2% |
| 3zdrA01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 38.0 | 2.56e-01 | 79.5% | 76.2% |
| 4bq6F00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.53 | 36.0 | 2.51e-01 | 71.8% | 95.3% |
| 3netB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.53 | 44.0 | 3.40e-01 | 100.0% | 75.5% |
| 8bveA03 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.53 | 40.0 | 3.41e-01 | 89.7% | 72.2% |
| 3t5tB01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.52 | 38.0 | 2.35e-01 | 87.2% | 13.9% |
| 1mukA02 | 3.90.1850.10 | Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3 | 0.52 | 41.0 | 2.34e-01 | 100.0% | 64.1% |
| 6rwcA02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.52 | 34.0 | 3.45e-01 | 74.4% | 59.0% |
| 3puaA01 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.51 | 38.0 | 2.45e-01 | 100.0% | 15.4% |
| 2rijA03 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.51 | 38.0 | 2.69e-01 | 97.4% | 63.8% |
| 3pvlA05 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.50 | 36.0 | 3.07e-01 | 87.2% | 42.1% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4148130 | 4203.1.1.1 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 | 0.73 | 55.0 | 5.04e-01 | 87.2% | 74.5% |
| 4180555 | 4203.1.1.1 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 | 0.72 | 55.0 | 5.03e-01 | 87.2% | 70.9% |
| 4065083 | 4203.1.1.1 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 | 0.72 | 53.0 | 4.89e-01 | 84.6% | 69.1% |
| 4366971 | 4203.1.1.1 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 | 0.72 | 54.0 | 4.94e-01 | 84.6% | 69.1% |
| 4537675 | 4203.1.1.1 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 | 0.72 | 53.0 | 4.88e-01 | 84.6% | 67.3% |
| 4791603 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.72 | 49.0 | 3.61e-01 | 71.8% | 28.9% |
| 5024386 | 2484.4.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like | 0.69 | 50.0 | 3.75e-01 | 79.5% | 42.0% |
| 4025894 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 45.0 | 3.21e-01 | 79.5% | 24.8% |
| 3471224 | 206.1.2.3 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › IPK | 0.63 | 45.0 | 2.76e-01 | 82.1% | 24.9% |
| 3807500 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.59 | 40.0 | 2.42e-01 | 76.9% | 13.1% |
| 3720527 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.59 | 45.0 | 3.02e-01 | 92.3% | 20.6% |
| 3661784 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.59 | 41.0 | 2.51e-01 | 76.9% | 12.9% |
| 3261599 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.59 | 42.0 | 2.70e-01 | 74.4% | 24.5% |
| 3294906 | 5.1.5.86 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Kelch_1 | 0.59 | 43.0 | 2.59e-01 | 76.9% | 96.3% |
| 4122293 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.59 | 47.0 | 3.66e-01 | 100.0% | 78.0% |
| 3479549 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 44.0 | 3.08e-01 | 92.3% | 47.3% |
| 3817530 | 5.1.3.65 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 | 0.58 | 45.0 | 2.79e-01 | 87.2% | 96.1% |
| 3588167 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.58 | 47.0 | 3.61e-01 | 100.0% | 74.3% |
| 3651311 | 1.1.1.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C | 0.58 | 47.0 | 3.26e-01 | 100.0% | 47.7% |
| 3712524 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.57 | 43.0 | 4.00e-01 | 94.9% | 65.5% |
| 3255254 | 206.1.2.3 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › IPK | 0.56 | 41.0 | 2.54e-01 | 89.7% | 16.3% |
| 3766109 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 38.0 | 3.67e-01 | 76.9% | 56.0% |
| 4492004 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.56 | 42.0 | 3.19e-01 | 97.4% | 64.1% |
| 5023652 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 42.0 | 2.79e-01 | 89.7% | 21.6% |
| 3254029 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.53 | 43.0 | 3.45e-01 | 100.0% | 92.6% |
| 4113442 | 101.26.1.2 ↗ | alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › HTH_44 | 0.53 | 36.0 | 2.58e-01 | 74.4% | 42.8% |
| 3320639 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.52 | 37.0 | 2.45e-01 | 84.6% | 18.6% |
| 2321110 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.51 | 38.0 | 2.58e-01 | 87.2% | 44.5% |
| 4014836 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.50 | 40.0 | 3.20e-01 | 89.7% | 65.9% |
| 3935682 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.50 | 33.0 | 3.02e-01 | 71.8% | 40.0% |