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MG835450.1__AUV61425.1__phiPsal1_016__00016

Bact-Vir

MG835450.1__AUV61425.1__phiPsal1_016__00016

Identity

Accession:
MG835450 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pontimonas_phage_phiPsal1

TaxID: 2079347

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-78
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o5uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 34.0 3.27e-01 100.0% 37.5%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 41.0 4.41e-01 100.0% 68.2%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 41.0 4.37e-01 100.0% 69.7%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 35.0 2.69e-01 100.0% 25.0%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 39.0 4.67e-01 98.7% 91.8%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 42.0 4.79e-01 100.0% 90.9%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 40.0 3.69e-01 100.0% 49.0%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 43.0 3.71e-01 100.0% 45.6%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 41.0 3.56e-01 100.0% 42.7%
2fr5A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.63 41.0 3.33e-01 100.0% 36.8%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 34.0 3.32e-01 100.0% 46.0%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 36.0 4.35e-01 100.0% 91.7%
2d7nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 35.0 3.50e-01 100.0% 53.2%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 34.0 2.94e-01 100.0% 34.2%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 4.43e-01 100.0% 79.4%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 4.08e-01 100.0% 65.1%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.60 35.0 3.53e-01 100.0% 56.6%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 4.57e-01 100.0% 86.2%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.59 38.0 3.25e-01 100.0% 41.9%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.59 38.0 3.51e-01 100.0% 51.0%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.59 38.0 3.07e-01 100.0% 34.5%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 3.85e-01 100.0% 61.6%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.59 37.0 3.81e-01 100.0% 66.2%
3vgfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 33.0 3.18e-01 100.0% 47.1%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.34e-01 100.0% 79.5%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.57 31.0 3.37e-01 100.0% 62.3%
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 4.67e-01 100.0% 98.3%
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.56 43.0 3.04e-01 88.0% 81.8%
3uh8A00 2.60.40.3350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 35.0 3.07e-01 100.0% 39.8%
1eerC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 36.0 3.39e-01 100.0% 53.6%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.54 38.0 4.08e-01 100.0% 87.5%
1hlvA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 40.0 4.43e-01 96.0% 98.3%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 39.0 3.57e-01 100.0% 56.7%
3i6sA03 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.54 48.0 4.01e-01 100.0% 96.2%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 38.0 3.89e-01 100.0% 77.8%
2pwyA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 37.0 4.19e-01 100.0% 98.2%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.43e-01 100.0% 58.7%
1hezE00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 36.0 3.99e-01 100.0% 90.2%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.13e-01 100.0% 39.1%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.52 36.0 3.92e-01 100.0% 88.7%
2pq0A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.52 39.0 3.64e-01 84.0% 99.0%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.50 44.0 3.70e-01 100.0% 90.2%
3vzbB02 2.60.200.40 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.50 44.0 3.31e-01 100.0% 95.4%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3265105 11.1.1.802 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.72 40.0 3.71e-01 100.0% 43.2%
5040690 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.72 42.0 3.89e-01 100.0% 46.3%
4658938 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.70 41.0 3.89e-01 100.0% 50.0%
4123180 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.69 41.0 4.18e-01 100.0% 60.0%
4478186 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 40.0 5.03e-01 98.7% 97.8%
4163851 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 41.0 4.58e-01 100.0% 76.7%
3924183 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 38.0 3.76e-01 100.0% 51.2%
3839016 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 41.0 4.35e-01 100.0% 72.3%
3969500 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 40.0 3.70e-01 100.0% 49.5%
1878249 11.1.1.256 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PulA_N1 0.64 40.0 3.71e-01 100.0% 49.0%
3447802 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.64 39.0 3.73e-01 100.0% 51.1%
4221708 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.62 42.0 4.40e-01 100.0% 75.7%
3877348 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.61 36.0 2.97e-01 100.0% 31.9%
4997210 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.60 38.0 3.55e-01 100.0% 52.2%
4158495 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.60 37.0 3.56e-01 100.0% 52.2%
3947908 4275.1.1.1 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_connect_1 0.59 48.0 4.52e-01 88.0% 90.0%
4033484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 41.0 4.43e-01 100.0% 84.4%
3257396 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 34.0 3.25e-01 100.0% 48.9%
3930427 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.57 36.0 3.81e-01 100.0% 73.8%
3264437 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 34.0 3.09e-01 100.0% 42.9%
3232582 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 40.0 3.73e-01 100.0% 58.9%
3291634 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.56 45.0 3.27e-01 94.7% 98.4%
3188282 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.55 48.0 2.99e-01 100.0% 48.8%
3275969 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 33.0 2.99e-01 100.0% 42.9%
167127 284.1.1.9 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N 0.53 37.0 4.22e-01 100.0% 100.0%
3385787 2487.1.1.5 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › CPSase_sm_chain 0.53 45.0 3.73e-01 100.0% 91.0%
3258896 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 32.0 3.03e-01 100.0% 46.3%
3421509 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.52 45.0 3.72e-01 100.0% 97.1%
3366242 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.52 46.0 3.78e-01 100.0% 97.9%
4207197 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 37.0 3.48e-01 100.0% 59.0%
3190308 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 46.0 3.55e-01 100.0% 47.6%
4133464 2487.1.1.5 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › CPSase_sm_chain 0.52 44.0 3.67e-01 100.0% 91.0%
4023481 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 43.0 3.53e-01 100.0% 58.7%
5022769 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.52 37.0 3.23e-01 100.0% 50.4%
3586954 1.1.7.22 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 0.51 40.0 3.74e-01 100.0% 67.4%
3419597 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.51 37.0 3.17e-01 85.3% 46.4%
3883725 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 46.0 3.98e-01 100.0% 95.6%
3231131 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 37.0 3.35e-01 78.7% 95.2%
3503474 2006.1.1.44 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.50 44.0 3.12e-01 100.0% 32.4%