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MG835568.1__AUV61466.1__2410_orf00001__00001

Bact-Vir

MG835568.1__AUV61466.1__2410_orf00001__00001

Identity

Accession:
MG835568 ↗
Kingdom:
phage

Quality

72.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Przondovirus› Klebsiella_phage_SH-Kp_152410

TaxID: 2066504

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-62
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.84 70.0 5.51e-01 100.0% 45.3%
3kihC01 2.20.25.510 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.67 37.0 4.31e-01 86.3% 79.4%
4gniB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 46.0 3.35e-01 90.2% 69.9%
4fk5A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 46.0 2.86e-01 90.2% 15.6%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 44.0 2.77e-01 86.3% 82.5%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 4.39e-01 84.3% 100.0%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 47.0 3.76e-01 96.1% 81.5%
2ablA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 45.0 3.80e-01 94.1% 83.5%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.56 45.0 3.15e-01 90.2% 50.0%
4qiwB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.56 44.0 3.31e-01 100.0% 87.7%
1milA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 45.0 3.71e-01 96.1% 74.0%
2wfwA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 39.0 3.80e-01 76.5% 91.4%
1ncsA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.55 37.0 3.88e-01 86.3% 78.7%
3ey7A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 44.0 3.52e-01 98.0% 83.5%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.54 35.0 3.46e-01 94.1% 60.0%
3d2fA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.54 44.0 4.01e-01 100.0% 97.4%
7w3rB01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 43.0 2.71e-01 94.1% 25.7%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 44.0 3.72e-01 96.1% 69.2%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.53 39.0 2.73e-01 82.4% 25.7%
3nksA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 41.0 2.43e-01 88.2% 40.6%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 41.0 3.48e-01 96.1% 79.0%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.52 40.0 3.19e-01 92.2% 75.0%
1nbwA05 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 3.94e-01 86.3% 91.1%
3kz5E00 6.10.140.1550 Special › Helix non-globular › Helix Hairpins › 0.51 33.0 3.44e-01 74.5% 66.7%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.50 37.0 3.63e-01 82.4% 85.7%
2d5wA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.50 39.0 2.63e-01 94.1% 66.5%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 35.0 3.31e-01 74.5% 66.7%
4tvcA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.50 40.0 2.87e-01 100.0% 48.4%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3586841 378.1.1.7 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 0.85 76.0 5.80e-01 100.0% 52.2%
3741267 207.1.1.454 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › DIPSY 0.60 41.0 4.18e-01 70.6% 80.0%
3509350 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.59 48.0 3.63e-01 94.1% 61.2%
2276 4112.1.1.1 ↗ beta duplicates or obligate multimers › YopX, N-terminal domain-like › YopX, N-terminal domain-like › YopX, N-terminal domain-like › YopX 0.59 43.0 3.95e-01 78.4% 77.6%
4957662 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.58 35.0 3.23e-01 72.5% 42.9%
4028527 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.58 47.0 3.26e-01 90.2% 91.7%
3514017 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.58 48.0 3.81e-01 98.0% 73.0%
3236050 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.58 46.0 3.70e-01 92.2% 88.2%
3457984 59.1.2.4 ↗ beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › Leo1 0.58 40.0 3.07e-01 70.6% 45.8%
3518947 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.58 47.0 3.71e-01 96.1% 70.8%
3478371 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 45.0 3.71e-01 94.1% 80.9%
3377603 59.1.1.10 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 0.57 38.0 2.96e-01 70.6% 45.0%
4327598 59.1.1.10 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 0.57 39.0 2.99e-01 70.6% 44.2%
3589894 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.57 44.0 3.24e-01 92.2% 83.6%
3172837 59.1.1.10 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 0.56 39.0 2.94e-01 70.6% 42.3%
3619626 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 44.0 3.77e-01 94.1% 84.2%
4389834 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.56 44.0 3.13e-01 90.2% 85.1%
3583928 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 44.0 3.62e-01 94.1% 76.2%
3391277 59.1.1.10 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 0.55 38.0 3.32e-01 70.6% 67.5%
4202676 5.1.3.20 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 0.55 43.0 2.81e-01 94.1% 43.2%
3843531 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 43.0 3.65e-01 96.1% 84.0%
3883458 59.1.1.2 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › RNA_pol_Rpc4 0.54 36.0 2.95e-01 70.6% 60.4%
3348812 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 43.0 3.22e-01 96.1% 52.4%
5058752 2003.1.2.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.53 42.0 2.58e-01 94.1% 83.3%
3622645 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.53 38.0 3.19e-01 80.4% 77.9%
3749834 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.52 40.0 3.95e-01 88.2% 98.2%
4881031 4315.1.1.1 ↗ beta barrels › Coronavirus NSP8-like › Coronavirus NSP8-like › Coronavirus NSP8-like › CoV_NSP8 0.52 38.0 2.69e-01 84.3% 27.2%
5066058 7571.1.1.1 ↗ a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N 0.51 37.0 2.39e-01 78.4% 98.7%
4231809 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.50 39.0 2.34e-01 92.2% 19.4%
6422 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.50 35.0 3.31e-01 74.5% 66.7%