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MG839022.1__AUX83077.1__PBI_LUDGATE_53__00053
Bact-VirMG839022.1__AUX83077.1__PBI_LUDGATE_53__00053
Identity
- Accession:
- MG839022 ↗
- Kingdom:
- phage
Quality
80.1
mean pLDDT
Taxonomy
TaxID: 2079587
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-94
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u61A00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.71 | 62.0 | 5.00e-01 | 97.0% | 87.4% |
| 2d2eA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 60.0 | 4.14e-01 | 100.0% | 41.8% |
| 4p32B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.68 | 60.0 | 4.12e-01 | 100.0% | 43.5% |
| 7r8bB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 56.0 | 3.77e-01 | 100.0% | 28.1% |
| 3fblA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 45.0 | 4.24e-01 | 72.7% | 87.8% |
| 3um7A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 44.0 | 3.82e-01 | 71.2% | 57.3% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 45.0 | 4.49e-01 | 74.2% | 89.6% |
| 2mqaA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.62 | 54.0 | 4.41e-01 | 100.0% | 90.4% |
| 6xgzE01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 52.0 | 3.56e-01 | 100.0% | 39.9% |
| 1f81A00 | 1.20.1020.10 | Mainly Alpha › Up-down Bundle › CREB-binding Protein; Chain A › TAZ domain | 0.58 | 34.0 | 3.10e-01 | 74.2% | 44.8% |
| 4jd9G00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.57 | 52.0 | 4.23e-01 | 100.0% | 55.8% |
| 3jrtA00 | 1.20.120.1060 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.57 | 41.0 | 3.10e-01 | 77.3% | 91.6% |
| 3futA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.55 | 42.0 | 4.23e-01 | 100.0% | 86.2% |
| 3wecA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.54 | 48.0 | 3.00e-01 | 100.0% | 56.9% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 45.0 | 4.21e-01 | 98.5% | 75.0% |
| 2y1eA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 45.0 | 4.18e-01 | 98.5% | 77.0% |
| 3nxaB00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.53 | 43.0 | 3.89e-01 | 100.0% | 62.9% |
| 1tjoB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 43.0 | 3.23e-01 | 92.4% | 66.9% |
| 2rfbA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.52 | 46.0 | 2.89e-01 | 98.5% | 60.1% |
| 2px0A01 | 1.20.120.1380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar FlhF biosynthesis protein, N domain | 0.52 | 43.0 | 4.24e-01 | 97.0% | 94.5% |
| 1aepA00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.51 | 40.0 | 3.18e-01 | 89.4% | 85.0% |
| 5oklA01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.50 | 43.0 | 3.81e-01 | 98.5% | 87.1% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3178422 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 60.0 | 3.44e-01 | 100.0% | 14.6% |
| 4846309 | 2004.1.1.7 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran,BCA_ABC_TP_C | 0.68 | 61.0 | 4.13e-01 | 100.0% | 42.0% |
| 3253705 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.68 | 60.0 | 3.80e-01 | 100.0% | 22.0% |
| 3318299 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.68 | 60.0 | 3.81e-01 | 100.0% | 31.6% |
| 3671314 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.68 | 60.0 | 4.06e-01 | 100.0% | 62.2% |
| 3610952 | 171.1.1.0 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like | 0.68 | 59.0 | 4.82e-01 | 98.5% | 71.2% |
| 3177669 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.66 | 57.0 | 3.62e-01 | 100.0% | 26.0% |
| 4203116 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.65 | 52.0 | 5.30e-01 | 97.0% | 87.7% |
| 3177803 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.65 | 52.0 | 4.61e-01 | 97.0% | 60.0% |
| 3398955 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.64 | 54.0 | 3.53e-01 | 100.0% | 30.6% |
| 3233936 | 627.1.1.2 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › DUF5601 | 0.64 | 45.0 | 4.05e-01 | 74.2% | 81.1% |
| 5051911 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.63 | 55.0 | 3.67e-01 | 100.0% | 35.6% |
| 3211803 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.63 | 53.0 | 4.77e-01 | 98.5% | 70.5% |
| 4438372 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.63 | 52.0 | 3.49e-01 | 100.0% | 24.3% |
| 3955363 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.61 | 52.0 | 3.55e-01 | 100.0% | 38.1% |
| 5070580 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.61 | 45.0 | 4.69e-01 | 97.0% | 88.1% |
| 3469373 | 109.4.1.1660 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27570 | 0.61 | 53.0 | 3.29e-01 | 98.5% | 29.6% |
| 3679541 | 109.4.1.1297 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 | 0.60 | 53.0 | 3.04e-01 | 98.5% | 18.2% |
| 3909225 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.60 | 53.0 | 4.47e-01 | 98.5% | 81.8% |
| 3592509 | 3273.1.1.0 ↗ | alpha arrays › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins | 0.59 | 43.0 | 3.50e-01 | 78.8% | 85.6% |
| 3412727 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.58 | 45.0 | 4.70e-01 | 100.0% | 96.7% |
| 3952621 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.58 | 40.0 | 4.00e-01 | 72.7% | 73.9% |
| 3459778 | 1016.1.1.0 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 | 0.58 | 52.0 | 4.07e-01 | 100.0% | 87.9% |
| 3401131 | 5001.1.1.3 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 | 0.58 | 51.0 | 3.35e-01 | 100.0% | 56.8% |
| 5001687 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.58 | 41.0 | 4.20e-01 | 98.5% | 79.4% |
| 3659624 | 1016.1.1.0 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 | 0.57 | 50.0 | 3.98e-01 | 100.0% | 87.9% |
| 2971894 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 48.0 | 3.55e-01 | 97.0% | 87.0% |
| 4211419 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.57 | 48.0 | 4.14e-01 | 100.0% | 70.4% |
| 4943605 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.57 | 51.0 | 3.37e-01 | 98.5% | 28.5% |
| 3800176 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 45.0 | 4.14e-01 | 84.8% | 76.5% |
| 3259816 | 592.6.1.2 ↗ | alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › PF26582 | 0.56 | 44.0 | 3.78e-01 | 89.4% | 89.1% |
| 4046483 | 6056.1.1.0 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like | 0.56 | 46.0 | 4.23e-01 | 100.0% | 74.7% |
| 364898 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.54 | 39.0 | 2.76e-01 | 75.8% | 58.6% |
| 3742315 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.54 | 46.0 | 4.00e-01 | 100.0% | 92.7% |
| 3403243 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.53 | 44.0 | 3.78e-01 | 100.0% | 55.0% |
| 3811892 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.52 | 44.0 | 4.16e-01 | 100.0% | 81.2% |
| 3390907 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 43.0 | 4.08e-01 | 100.0% | 77.4% |
| 4930113 | 102.1.2.37 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › T1RH-like_C | 0.52 | 44.0 | 4.03e-01 | 95.5% | 85.4% |
| 3448464 | 141.1.1.0 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases | 0.52 | 43.0 | 2.90e-01 | 97.0% | 56.1% |
| 3514842 | 603.1.1.3 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE | 0.52 | 37.0 | 3.12e-01 | 74.2% | 61.0% |
| 2168246 | 1176.1.1.1 ↗ | alpha arrays › Nitrogenase vanadium-iron protein delta chain › Nitrogenase vanadium-iron protein delta chain › Nitrogenase vanadium-iron protein delta chain › AnfG_VnfG | 0.51 | 40.0 | 3.47e-01 | 92.4% | 52.2% |
| 3673255 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.50 | 42.0 | 3.14e-01 | 97.0% | 44.9% |