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MG845683.1__AVH86113.1__phiNV3_p04__00004

Bact-Vir

MG845683.1__AVH86113.1__phiNV3_p04__00004

Identity

Accession:
MG845683 ↗
Kingdom:
phage

Quality

88.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Kirikabuvirus› Pseudomonas_phage_phiNV3

TaxID: 2079544

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-67
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vfrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.67 51.0 3.52e-01 98.5% 24.9%
2vk9A03 1.10.3730.30 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › 0.66 60.0 5.20e-01 100.0% 73.5%
1a7wA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.62 50.0 5.00e-01 89.2% 98.5%
4gx0A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 43.0 3.68e-01 73.8% 68.0%
1tafB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.60 49.0 4.78e-01 87.7% 91.4%
5m0nA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.59 50.0 3.07e-01 96.9% 69.3%
3qxzA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.58 43.0 4.43e-01 80.0% 93.3%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.58 51.0 4.54e-01 100.0% 85.1%
4ezbA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.57 45.0 3.75e-01 87.7% 94.9%
1t7lB01 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.56 48.0 3.03e-01 98.5% 94.2%
3sllA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.56 42.0 4.32e-01 80.0% 91.8%
2qgsB01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.53 45.0 4.10e-01 95.4% 93.2%
2px7A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.52 41.0 2.97e-01 89.2% 86.7%
2kvdA02 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.51 32.0 3.36e-01 81.5% 70.7%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4587007 3718.1.1.0 ↗ alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT 0.64 44.0 3.80e-01 70.8% 51.0%
4990095 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.62 45.0 4.17e-01 76.9% 64.7%
3803849 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 51.0 4.83e-01 100.0% 80.0%
3766780 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.58 47.0 3.76e-01 95.4% 86.2%
4016952 5050.1.1.1 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.54 47.0 3.26e-01 100.0% 65.5%
4871955 304.48.1.11 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.53 37.0 3.68e-01 100.0% 68.5%
3747750 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.53 41.0 2.85e-01 89.2% 25.8%
3410177 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 44.0 3.81e-01 95.4% 77.0%