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MG867727.1__AVH86055.1__G28_00229__00221

Bact-Vir

MG867727.1__AVH86055.1__G28_00229__00221

Identity

Accession:
MG867727 ↗
Kingdom:
phage

Quality

82.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tequatrovirus› Escherichia_phage_vB_EcoM-G28

TaxID: 2081604

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-62
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17527.9 best ALC 56.6 4.30e-15 88.1% 27.4%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.70 43.0 3.63e-01 94.9% 35.6%
4iu9A00 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.63 54.0 3.27e-01 96.6% 44.2%
4yosA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 45.0 3.19e-01 76.3% 33.1%
2rd9B01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.61 53.0 3.82e-01 100.0% 86.3%
4n81A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.60 42.0 3.23e-01 89.8% 32.4%
4at7B01 1.10.1410.40 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.60 44.0 3.35e-01 78.0% 36.1%
3g0kA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 38.0 3.00e-01 81.4% 31.2%
8gr2A01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.56 44.0 3.07e-01 86.4% 53.3%
3fdbA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 45.0 3.30e-01 86.4% 32.9%
7tjbA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.55 42.0 2.94e-01 84.7% 51.0%
2plgA01 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 46.0 3.62e-01 96.6% 90.2%
2pbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 42.0 2.94e-01 88.1% 74.3%
3nycA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 40.0 2.81e-01 91.5% 61.9%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.23e-01 83.1% 60.6%
4pqgA03 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 39.0 2.83e-01 83.1% 78.7%
4egjB03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.51 36.0 3.54e-01 76.3% 70.3%
5ocrA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 34.0 2.28e-01 72.9% 61.2%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3323897 2485.1.1.13 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GST_N 0.76 58.0 5.01e-01 81.4% 100.0%
5011134 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.70 48.0 3.38e-01 94.9% 24.9%
3717089 3142.1.1.0 ↗ alpha arrays › a domain of protein A6KY75 › a domain of protein A6KY75 › a domain of protein A6KY75 0.67 39.0 3.55e-01 94.9% 42.5%
3591905 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.66 53.0 4.21e-01 86.4% 44.3%
3460642 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.66 45.0 3.45e-01 98.3% 30.1%
None — 0.65 47.0 3.51e-01 100.0% 29.7%
3715965 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.65 47.0 3.56e-01 98.3% 31.3%
3350669 502.1.1.1 ↗ a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.64 58.0 5.45e-01 98.3% 98.6%
4991135 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.64 50.0 4.07e-01 83.1% 68.6%
1879630 601.44.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in anaphase-promoting complex subunit 4 › Helical bundle domain in anaphase-promoting complex subunit 4 › ANAPC4 0.63 54.0 3.53e-01 100.0% 91.8%
4027404 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.63 53.0 4.58e-01 96.6% 58.9%
4345267 502.1.1.1 ↗ a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.62 56.0 5.04e-01 100.0% 88.7%
5061914 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.61 53.0 3.68e-01 96.6% 86.5%
5042137 244.3.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › TSCPD 0.61 52.0 4.11e-01 94.9% 71.7%
3740887 102.1.2.10 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage 0.60 49.0 3.00e-01 86.4% 24.9%
4954786 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.60 49.0 4.37e-01 100.0% 62.4%
4163672 502.1.1.1 ↗ a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.58 51.0 4.86e-01 98.3% 98.6%
3218028 180.1.1.1 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.57 51.0 3.36e-01 100.0% 27.7%
4963032 244.2.1.15 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › TSCPD 0.56 40.0 3.21e-01 74.6% 50.9%
3567566 5050.1.1.1 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.56 47.0 3.12e-01 96.6% 71.2%
3185449 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 45.0 3.41e-01 88.1% 52.9%
5040105 244.3.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › TSCPD 0.56 40.0 3.19e-01 74.6% 50.0%
3554465 101.1.1.8 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TEA 0.56 42.0 3.98e-01 81.4% 74.3%
4021528 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 43.0 3.28e-01 88.1% 59.0%
4296904 101.1.1.8 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TEA 0.54 41.0 3.85e-01 84.7% 90.7%
3812745 221.4.1.28 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › DUF7915 0.53 42.0 3.04e-01 84.7% 65.0%
3560411 148.1.3.336 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Glyco_hydro_15 0.52 42.0 2.90e-01 86.4% 35.2%
4892175 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.52 43.0 3.29e-01 89.8% 83.7%
3727006 243.1.1.9 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF1348 0.51 42.0 3.12e-01 93.2% 65.9%
4014596 109.4.1.509 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRP12_HEAT 0.50 39.0 2.35e-01 86.4% 17.4%