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MG873442.1__AVJ48189.1__X__00058

Bact-Vir

MG873442.1__AVJ48189.1__X__00058

Identity

Accession:
MG873442 ↗
Kingdom:
phage

Quality

75.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-88
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pzsA00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.71 54.0 4.29e-01 81.4% 100.0%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.69 48.0 4.03e-01 70.9% 68.3%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.67 46.0 4.06e-01 70.9% 47.7%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.67 48.0 5.35e-01 75.6% 97.0%
1qhwA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.66 46.0 3.12e-01 72.1% 85.7%
2wkkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 57.0 4.81e-01 100.0% 80.0%
4v19S00 3.30.420.80 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 0.65 45.0 3.88e-01 73.3% 65.0%
4i79A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 50.0 3.35e-01 81.4% 92.4%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.65 46.0 4.69e-01 75.6% 91.9%
2zgoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 56.0 4.59e-01 100.0% 76.6%
3zxkA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 56.0 4.23e-01 100.0% 68.5%
2r0hA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 55.0 4.60e-01 100.0% 81.2%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 44.0 3.78e-01 70.9% 51.1%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.63 47.0 4.41e-01 77.9% 86.5%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.62 52.0 4.28e-01 89.5% 86.0%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.62 47.0 4.16e-01 82.6% 93.2%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.62 47.0 5.01e-01 80.2% 93.2%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 46.0 4.26e-01 77.9% 82.4%
3mepA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 54.0 4.31e-01 100.0% 87.2%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.62 46.0 3.87e-01 79.1% 72.8%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 50.0 3.89e-01 88.4% 63.9%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.61 43.0 3.65e-01 74.4% 63.7%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.60 45.0 4.05e-01 80.2% 77.4%
3tg9A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 45.0 3.08e-01 87.2% 21.4%
3ffzA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 41.0 3.26e-01 70.9% 91.6%
3kg6C00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.59 46.0 3.17e-01 81.4% 72.6%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 47.0 3.88e-01 88.4% 72.7%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 44.0 3.97e-01 82.6% 99.2%
3u1kC01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.59 45.0 3.34e-01 82.6% 98.7%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.58 46.0 3.72e-01 84.9% 74.1%
2uvaG09 2.40.128.700 Mainly Beta › Beta Barrel › Lipocalin › 0.58 45.0 4.06e-01 82.6% 90.5%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.58 51.0 3.97e-01 95.3% 72.9%
3wwxA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 45.0 3.01e-01 90.7% 21.8%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.56 49.0 3.87e-01 95.3% 69.6%
2r1bA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 3.71e-01 98.8% 71.7%
2nn6E00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.55 37.0 2.69e-01 70.9% 89.1%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 50.0 3.17e-01 100.0% 81.8%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 49.0 4.44e-01 98.8% 85.1%
1pz7A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.69e-01 98.8% 77.7%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.54 42.0 4.24e-01 88.4% 98.9%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.54 42.0 3.47e-01 82.6% 83.8%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 43.0 3.60e-01 91.9% 70.1%
1eerC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.60e-01 74.4% 93.8%
3rjuA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 42.0 2.84e-01 89.5% 24.5%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 38.0 3.46e-01 79.1% 62.5%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.51 38.0 3.17e-01 79.1% 46.8%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.85e-01 93.0% 89.0%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 41.0 3.44e-01 91.9% 96.3%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038443 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.71 43.0 4.64e-01 81.4% 70.7%
4031638 7089.1.1.1 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF1108 0.71 49.0 4.96e-01 70.9% 75.3%
4124524 2484.1.1.12 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.68 60.0 4.50e-01 96.5% 89.3%
3579989 5.1.4.116 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 0.68 52.0 3.39e-01 81.4% 91.1%
4631594 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.67 46.0 3.12e-01 72.1% 82.9%
3920679 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.66 46.0 3.10e-01 72.1% 81.2%
3923688 5.1.4.116 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 0.66 52.0 3.27e-01 82.6% 84.8%
4992060 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.66 54.0 4.30e-01 89.5% 90.3%
4324615 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.66 51.0 4.15e-01 81.4% 89.7%
3703341 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.66 45.0 2.98e-01 70.9% 69.1%
5046458 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.65 55.0 4.23e-01 88.4% 85.7%
1077 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.65 57.0 4.80e-01 100.0% 80.0%
4975453 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.65 53.0 4.21e-01 87.2% 83.4%
4964031 7089.1.1.7 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF7543 0.64 47.0 5.16e-01 87.2% 95.7%
3238997 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.64 44.0 3.81e-01 70.9% 49.6%
1123620 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.64 56.0 4.62e-01 100.0% 79.8%
4133336 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.64 56.0 4.60e-01 100.0% 79.3%
3794738 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.64 57.0 4.41e-01 100.0% 66.7%
3920826 844.1.1.4 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.64 56.0 4.46e-01 95.3% 78.8%
3912012 844.1.1.4 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.64 56.0 4.27e-01 95.3% 69.2%
3746311 844.1.1.4 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.63 56.0 4.15e-01 95.3% 67.1%
3737835 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.63 48.0 4.59e-01 87.2% 69.0%
4229035 2484.1.1.12 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.63 55.0 4.25e-01 97.7% 90.5%
5056195 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 49.0 3.28e-01 82.6% 94.3%
5048095 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.63 44.0 3.14e-01 72.1% 81.0%
3266113 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.63 43.0 2.93e-01 70.9% 88.5%
4978449 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.63 43.0 2.98e-01 70.9% 77.2%
3882269 220.1.1.25 beta barrels › PH domain-like › PH domain-like › PH domain-like › CARM1 0.63 48.0 4.53e-01 80.2% 90.5%
3546198 5.1.4.149 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR54 0.63 49.0 3.23e-01 82.6% 72.2%
4987280 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.63 43.0 3.06e-01 70.9% 73.3%
3196366 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.63 44.0 3.33e-01 72.1% 74.6%
5037155 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 48.0 3.01e-01 81.4% 65.5%
5079230 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.62 50.0 4.75e-01 88.4% 88.6%
1833801 220.1.1.25 beta barrels › PH domain-like › PH domain-like › PH domain-like › CARM1 0.62 46.0 4.26e-01 77.9% 82.4%
3651687 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 43.0 3.19e-01 72.1% 94.5%
4025875 844.1.1.4 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.61 54.0 3.96e-01 95.3% 68.4%
3593349 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 48.0 3.36e-01 84.9% 95.8%
3229101 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.61 41.0 4.46e-01 70.9% 82.2%
3660862 246.2.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.61 42.0 3.12e-01 72.1% 82.1%
3576415 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 52.0 3.44e-01 91.9% 57.6%
3928876 5.1.4.149 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR54 0.60 47.0 3.08e-01 82.6% 69.5%
3977969 9.11.1.0 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.60 46.0 4.33e-01 83.7% 89.1%
3735753 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 49.0 2.77e-01 87.2% 76.8%
5057625 5.1.4.43 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.60 49.0 3.09e-01 87.2% 44.5%
5018109 10.1.1.11 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.59 51.0 4.21e-01 97.7% 81.9%
5048874 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.59 51.0 4.08e-01 94.2% 73.4%
3242741 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.59 49.0 3.40e-01 97.7% 28.9%
3706065 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 44.0 3.90e-01 81.4% 81.5%
5037626 5.1.10.18 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › FG-GAP_3 0.58 42.0 4.30e-01 75.6% 77.6%
3197066 5.1.4.116 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 0.58 49.0 3.20e-01 93.0% 61.6%
4991564 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 51.0 4.24e-01 100.0% 92.9%
3933159 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 53.0 3.52e-01 100.0% 95.6%
3917937 220.1.1.173 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERK 0.57 43.0 3.94e-01 80.2% 84.3%
3597369 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.57 48.0 2.97e-01 90.7% 31.1%
3520877 4019.1.1.1 alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.57 41.0 2.83e-01 89.5% 20.4%
3602148 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 46.0 4.41e-01 87.2% 100.0%
3580069 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 44.0 2.92e-01 83.7% 86.4%
4012865 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.57 39.0 3.26e-01 72.1% 86.5%
3190424 10.1.1.49 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_59_C 0.56 49.0 3.95e-01 100.0% 96.7%
3852920 633.23.1.4 alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.56 43.0 3.22e-01 82.6% 70.0%
4012750 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 51.0 3.23e-01 100.0% 88.2%
5079458 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 47.0 3.06e-01 93.0% 53.3%
4994722 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.55 51.0 3.30e-01 100.0% 96.2%
4088247 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.55 46.0 2.87e-01 90.7% 45.4%
2831843 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 35.0 3.29e-01 96.5% 51.9%
3704328 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.55 43.0 4.38e-01 96.5% 85.5%
3486202 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 42.0 2.67e-01 82.6% 57.7%
None 0.54 47.0 3.08e-01 93.0% 56.6%
3929846 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 50.0 3.35e-01 100.0% 78.6%
5013467 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 43.0 3.05e-01 90.7% 57.7%
3635423 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.54 46.0 3.58e-01 93.0% 64.9%
4606701 7556.1.1.1 a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.54 38.0 2.52e-01 73.3% 23.5%
3591269 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 41.0 2.83e-01 83.7% 68.8%
3748155 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 47.0 3.65e-01 100.0% 94.0%
1273080 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.53 42.0 3.44e-01 82.6% 80.7%
3714612 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.52 42.0 3.45e-01 88.4% 49.1%
None 0.52 39.0 2.71e-01 82.6% 87.0%
3194130 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.52 46.0 3.01e-01 100.0% 90.1%
5047088 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.52 45.0 3.38e-01 96.5% 86.8%
4017127 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 45.0 3.15e-01 96.5% 74.3%
D2 high residues 95-159
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ckbA01 3.30.470.140 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.70 61.0 4.52e-01 100.0% 84.8%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.69 60.0 5.59e-01 100.0% 89.2%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.67 46.0 4.18e-01 73.8% 67.4%
1x31A02 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.66 49.0 3.03e-01 80.0% 50.4%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.65 47.0 4.77e-01 76.9% 90.5%
1fviA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.65 55.0 5.24e-01 100.0% 92.4%
2nyhA00 3.30.70.1240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › DOPA-like domains 0.65 49.0 4.18e-01 86.2% 86.2%
6p3xB01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.64 47.0 3.46e-01 78.5% 63.3%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.64 55.0 5.35e-01 100.0% 98.6%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.63 45.0 3.59e-01 80.0% 73.0%
2h6oA03 2.60.40.2820 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 54.0 4.64e-01 100.0% 94.5%
5utkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 53.0 4.84e-01 96.9% 94.4%
3r0nA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 54.0 4.34e-01 96.9% 93.8%
3pihA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.62 52.0 5.07e-01 93.8% 88.9%
2xf1A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.61 44.0 3.71e-01 80.0% 45.1%
2dm4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 50.0 4.51e-01 95.4% 89.4%
6rpxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 51.0 4.71e-01 96.9% 98.8%
7y8sA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 50.0 4.52e-01 96.9% 96.8%
4p04A01 2.60.40.3100 Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain 0.59 49.0 4.25e-01 95.4% 83.0%
5d2lE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 50.0 4.27e-01 96.9% 94.4%
2dn7A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 48.0 4.14e-01 93.8% 77.6%
3e8vA00 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.58 48.0 4.54e-01 93.8% 78.0%
5a2fA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 4.21e-01 95.4% 92.5%
1owwA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 48.0 4.37e-01 96.9% 91.4%
4pjeE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 4.17e-01 96.9% 93.5%
1fnfA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 4.30e-01 96.9% 93.3%
3r8qA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 4.32e-01 98.5% 93.3%
3b4nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 4.29e-01 96.9% 94.3%
5z06B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 4.10e-01 93.8% 87.0%
3q0hB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 4.03e-01 96.9% 89.7%
2fcbA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 4.26e-01 96.9% 90.8%
1d5rA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 43.0 3.52e-01 89.2% 86.5%
3kl0D01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 42.0 3.70e-01 87.7% 85.8%
2mngA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 40.0 3.30e-01 81.5% 77.9%
3hn5A02 2.60.40.2060 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 44.0 3.78e-01 93.8% 92.2%
1kt0A02 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 42.0 3.68e-01 90.8% 94.7%
2bk8A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 4.06e-01 96.9% 86.6%
5tzmA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 4.15e-01 96.9% 91.1%
5e4sA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 4.04e-01 96.9% 95.7%
5b71E00 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.54 44.0 3.97e-01 93.8% 90.3%
4dguA01 2.60.40.2680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 3.84e-01 96.9% 79.5%
4gucA00 2.60.40.3720 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 44.0 3.82e-01 100.0% 80.0%
7xc8A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.53 44.0 3.93e-01 95.4% 85.6%
8os3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.90e-01 96.9% 96.7%
2dtgE06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.83e-01 98.5% 87.4%
1sppB00 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.52 44.0 3.82e-01 100.0% 88.4%
4q66A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.95e-01 96.9% 88.0%
2hi1A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.52 43.0 2.89e-01 100.0% 55.1%
1ajwA00 2.70.50.30 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › Coagulation Factor XIII, subunit A, domain 1 0.52 42.0 3.36e-01 93.8% 84.1%
3wkmB01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 41.0 3.72e-01 95.4% 62.8%
2cspA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.87e-01 96.9% 91.8%
1si5H01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 42.0 3.62e-01 98.5% 72.3%
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.45e-01 100.0% 87.9%
2bzgA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 38.0 2.70e-01 83.1% 82.5%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1147807 206.1.3.29 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › MCEL_GT_NTPase 0.72 62.0 4.68e-01 100.0% 91.0%
4952123 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.68 50.0 5.22e-01 81.5% 98.3%
3545434 11.1.1.1066 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_NOMO 0.65 53.0 5.08e-01 89.2% 77.3%
4024040 822.1.1.0 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.65 49.0 4.93e-01 83.1% 92.3%
199962 3115.5.1.1 a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.65 47.0 4.77e-01 76.9% 90.5%
3586250 822.1.1.1 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.64 47.0 4.82e-01 81.5% 85.0%
3858842 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.64 54.0 4.82e-01 95.4% 87.4%
420847 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.64 47.0 3.95e-01 81.5% 46.7%
3479367 822.1.1.1 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.64 47.0 4.81e-01 81.5% 85.9%
3939315 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 50.0 4.23e-01 89.2% 76.5%
4972520 304.24.1.6 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › SBDS_C 0.62 42.0 4.06e-01 70.8% 95.9%
3760995 11.1.4.79 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO_12th 0.62 49.0 4.39e-01 89.2% 75.8%
3403464 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.61 45.0 4.64e-01 80.0% 88.3%
3482147 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.61 44.0 3.55e-01 80.0% 43.6%
5061361 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 47.0 4.50e-01 87.7% 90.0%
4020109 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 51.0 4.55e-01 96.9% 82.7%
3244906 221.1.1.113 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 0.60 46.0 4.01e-01 89.2% 83.6%
4018289 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 47.0 3.73e-01 90.8% 86.2%
4059301 1.1.13.47 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.59 43.0 3.68e-01 80.0% 75.5%
5037564 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 49.0 4.49e-01 96.9% 96.7%
4962141 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.58 48.0 4.43e-01 95.4% 91.1%
3905199 11.1.1.946 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2, Ig_3 0.57 49.0 3.65e-01 93.8% 46.3%
3460588 207.1.1.35 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8,Island 0.57 39.0 2.61e-01 72.3% 17.2%
3942988 4187.2.1.1 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA 0.57 43.0 4.33e-01 87.7% 100.0%
4009311 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.57 43.0 4.33e-01 87.7% 100.0%
3236827 1.1.8.18 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C 0.56 47.0 3.86e-01 95.4% 69.6%
3618629 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 42.0 3.40e-01 87.7% 60.0%
3713327 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 46.0 3.37e-01 98.5% 39.5%
2469738 11.1.1.986 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig, Ig_3 0.56 46.0 4.28e-01 92.3% 93.9%
4956335 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 4.22e-01 95.4% 89.4%
3478066 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 3.98e-01 98.5% 93.6%
4979689 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 3.78e-01 96.9% 69.6%
3922905 284.1.1.1 a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.55 42.0 3.62e-01 89.2% 88.7%
1144829 11.1.1.259 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3823_C 0.55 44.0 3.77e-01 93.8% 93.0%
4028176 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 42.0 3.69e-01 89.2% 82.7%
4940278 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 42.0 3.29e-01 92.3% 37.6%
3612075 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 43.0 3.20e-01 98.5% 39.5%
3474265 11.1.1.230 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › YBD 0.53 44.0 3.21e-01 100.0% 57.7%
4028488 224.1.1.0 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.53 38.0 3.15e-01 81.5% 71.4%
3899140 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 44.0 3.96e-01 96.9% 90.5%
3572928 11.1.4.79 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO_12th 0.53 42.0 3.44e-01 93.8% 57.9%
5010110 11.1.1.1438 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28525 0.52 40.0 3.73e-01 92.3% 78.9%
3233104 11.2.1.8 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.52 40.0 3.17e-01 89.2% 81.9%
5038723 11.1.1.351 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › K319L-like_PKD 0.51 44.0 3.92e-01 98.5% 89.5%
3611257 221.7.1.3 a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › UAE_UbL 0.51 43.0 3.64e-01 100.0% 68.3%
184942 10.2.1.56 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › P2_N 0.51 42.0 3.45e-01 100.0% 87.9%
5056376 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 4.06e-01 96.9% 91.3%
5014000 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.50 42.0 3.46e-01 100.0% 80.7%