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MG878892.2__AVI05030.1__X__00029

Bact-Vir

MG878892.2__AVI05030.1__X__00029

Identity

Accession:
MG878892 ↗
Kingdom:
phage

Quality

70.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-59
PDB
Domain cluster: representative
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x49A01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.77 58.0 4.93e-01 81.4% 96.9%
3dmlA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.76 52.0 4.48e-01 72.9% 100.0%
2fa8B00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.72 56.0 4.95e-01 84.7% 97.7%
1a8lA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.71 51.0 4.24e-01 76.3% 88.7%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.71 49.0 3.68e-01 72.9% 46.6%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.70 57.0 4.92e-01 88.1% 77.8%
2npbA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.67 50.0 4.44e-01 81.4% 95.5%
6etzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 51.0 4.55e-01 84.7% 92.9%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.65 47.0 4.26e-01 76.3% 82.3%
2mtzA02 2.40.440.10 Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like 0.65 50.0 3.97e-01 83.1% 87.4%
1jz7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 50.0 4.05e-01 86.4% 93.9%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.63 49.0 4.58e-01 88.1% 67.6%
1vwxH02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.63 52.0 4.52e-01 100.0% 90.3%
8b55A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 46.0 3.19e-01 88.1% 25.7%
5eoxB03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 50.0 3.95e-01 91.5% 93.0%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.62 46.0 3.36e-01 79.7% 97.5%
4jklA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 46.0 4.02e-01 83.1% 90.5%
4epkB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.62 50.0 3.24e-01 96.6% 26.7%
2vzsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 47.0 3.88e-01 84.7% 92.7%
8ep4C01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 44.0 2.80e-01 89.8% 17.1%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.61 43.0 3.60e-01 94.9% 45.3%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 43.0 4.14e-01 78.0% 71.8%
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.60 49.0 3.19e-01 98.3% 25.3%
2khxA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 43.0 4.00e-01 79.7% 81.0%
1sfeA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.59 43.0 3.99e-01 83.1% 59.3%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 44.0 3.71e-01 81.4% 85.6%
4cvuA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 46.0 3.75e-01 86.4% 95.7%
4efzB00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 50.0 3.20e-01 96.6% 79.6%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.58 48.0 3.84e-01 100.0% 86.1%
3pvnA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 47.0 3.17e-01 96.6% 24.8%
1lwrA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 44.0 3.83e-01 84.7% 88.5%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 42.0 4.00e-01 78.0% 70.4%
1wrjA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.58 39.0 3.76e-01 71.2% 100.0%
2gcuA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.57 49.0 3.30e-01 98.3% 84.8%
4cciA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 43.0 2.81e-01 86.4% 18.8%
4bhbA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.57 38.0 3.69e-01 76.3% 58.6%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 44.0 3.47e-01 88.1% 71.0%
2af5A02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.57 40.0 3.04e-01 74.6% 31.9%
2jkbA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 47.0 3.37e-01 98.3% 82.8%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 46.0 3.40e-01 100.0% 73.8%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.65e-01 81.4% 63.0%
2vy0B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 45.0 3.04e-01 96.6% 51.3%
3hbkA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.55 45.0 3.01e-01 89.8% 29.0%
2sliA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 45.0 3.08e-01 93.2% 27.0%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.55 39.0 2.72e-01 79.7% 76.2%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 45.0 3.48e-01 91.5% 51.9%
2dhjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.18e-01 81.4% 40.8%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.53 46.0 2.99e-01 100.0% 32.1%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.12e-01 96.6% 85.9%
4dqaA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 2.85e-01 93.2% 24.2%
7c8fA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 2.79e-01 89.8% 67.1%
1k8iA01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.53 40.0 3.71e-01 83.1% 68.8%
1mveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 2.99e-01 100.0% 71.1%
7kfuC01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.52 43.0 4.00e-01 93.2% 90.7%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.34e-01 96.6% 75.7%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.52 42.0 3.92e-01 98.3% 89.0%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 43.0 2.90e-01 94.9% 35.4%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 3.16e-01 91.5% 67.5%
3upsA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 44.0 3.61e-01 96.6% 89.8%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.51 36.0 3.61e-01 78.0% 79.3%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4675036 2485.1.1.6 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FHIPEP 0.79 55.0 4.56e-01 72.9% 89.0%
3945055 2484.2.1.1 mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain › Methyltransf_1N 0.75 56.0 4.95e-01 79.7% 58.8%
3958193 4091.1.1.0 beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like 0.72 53.0 3.93e-01 79.7% 81.3%
185415 3459.1.1.1 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.70 57.0 4.92e-01 88.1% 77.8%
3519113 330.1.1.24 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Paxt-1_C 0.69 50.0 4.05e-01 76.3% 43.6%
3616715 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.69 58.0 4.57e-01 100.0% 98.5%
4442643 330.1.1.25 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26980 0.69 51.0 4.43e-01 79.7% 85.6%
3685976 2485.1.1.87 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › UBX7_N 0.68 50.0 3.96e-01 79.7% 80.8%
5022543 2002.1.1.36 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind 0.67 53.0 3.12e-01 88.1% 11.7%
3333293 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.67 51.0 4.71e-01 81.4% 73.3%
4438233 101.35.1.5 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.66 46.0 3.82e-01 72.9% 41.9%
5032518 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.66 48.0 4.02e-01 86.4% 47.4%
3520914 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.65 51.0 2.84e-01 88.1% 9.9%
2048191 10.1.1.54 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Sialidase-like_CBM 0.64 53.0 3.58e-01 100.0% 26.1%
4589583 2008.1.1.191 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_HpaII 0.63 54.0 3.96e-01 100.0% 68.2%
3722269 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 45.0 4.35e-01 79.7% 77.1%
4148226 101.35.1.5 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.62 43.0 3.52e-01 72.9% 40.0%
4045712 4161.1.1.0 beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.61 52.0 3.50e-01 100.0% 29.2%
3701432 10.1.1.56 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.61 47.0 3.77e-01 93.2% 43.6%
3932534 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.61 45.0 3.90e-01 79.7% 85.3%
3728854 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 44.0 4.29e-01 78.0% 75.4%
3825518 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 46.0 4.34e-01 84.7% 78.7%
4488688 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.60 46.0 3.04e-01 86.4% 80.0%
4626220 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.59 46.0 3.07e-01 88.1% 83.1%
5002624 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.59 41.0 3.99e-01 78.0% 64.3%
4002571 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 42.0 3.41e-01 76.3% 91.7%
4024943 4351.1.1.0 alpha arrays › ATP12-like › ATP12-like › ATP12-like 0.59 42.0 2.95e-01 79.7% 24.1%
3967176 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.58 47.0 3.14e-01 94.9% 80.6%
3682832 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.58 42.0 3.22e-01 81.4% 60.0%
3841924 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 40.0 3.38e-01 76.3% 41.8%
4948490 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 39.0 3.67e-01 72.9% 69.3%
3209385 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 41.0 4.02e-01 78.0% 70.8%
3716389 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.56 46.0 2.86e-01 91.5% 60.3%
3921260 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 40.0 3.33e-01 78.0% 43.3%
3298595 10.1.1.11 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.56 43.0 3.29e-01 86.4% 77.4%
1100 10.1.1.32 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Sial-lect-inser 0.56 46.0 3.34e-01 100.0% 56.9%
5048803 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.56 47.0 2.93e-01 98.3% 15.6%
4030616 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 42.0 3.07e-01 86.4% 54.8%
4208333 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 41.0 3.33e-01 86.4% 40.0%
3961651 4091.1.1.1 beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD 0.55 50.0 4.15e-01 100.0% 74.0%
3668393 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.55 41.0 4.00e-01 81.4% 78.5%
3828973 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.55 41.0 4.07e-01 86.4% 81.5%
4995728 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.54 44.0 2.92e-01 94.9% 22.2%
4018977 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 42.0 3.45e-01 91.5% 60.0%
3580751 5.1.3.218 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40, WD40_CDC20-Fz 0.54 45.0 3.08e-01 98.3% 49.6%
4028871 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.54 43.0 4.07e-01 93.2% 94.5%
5000283 2006.1.2.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases 0.53 43.0 2.93e-01 91.5% 24.9%
4858751 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.53 44.0 3.53e-01 96.6% 82.0%
None 0.53 42.0 2.91e-01 94.9% 39.2%
3293710 10.1.1.58 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin 0.52 39.0 2.60e-01 88.1% 19.2%
3472304 10.1.1.1 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.52 46.0 3.07e-01 94.9% 38.5%
3414142 109.27.1.0 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.51 35.0 2.72e-01 96.6% 27.3%
3912902 233.1.1.3 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha 0.51 40.0 3.65e-01 91.5% 64.7%
3775796 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 41.0 3.07e-01 98.3% 57.8%
3577980 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.51 39.0 2.52e-01 91.5% 57.3%
3715600 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 2.60e-01 98.3% 70.2%
4792845 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.50 42.0 3.04e-01 100.0% 84.8%
3673098 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.50 42.0 3.40e-01 98.3% 76.8%
3399079 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 39.0 3.36e-01 93.2% 57.3%
3721144 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.50 40.0 2.88e-01 94.9% 62.0%