←Back to structures
MG878892.2__AVI05034.1__X__00025
Bact-VirMG878892.2__AVI05034.1__X__00025
Identity
- Accession:
- MG878892 ↗
- Kingdom:
- phage
Quality
83.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autonotataviridae›
Panjvirus›
Salmonella_phage_vB_SpuP_Spp16
TaxID: 2081603
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-120
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4v19400 | 6.20.130.20 | Special › Other non-globular › Ribosomal Protein L25; Chain P › Mitochondrial ribosomal protein L55 | 0.64 | 22.0 | 3.50e-01 | 78.8% | 77.8% |
| 3ttgA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.57 | 41.0 | 2.93e-01 | 74.6% | 63.5% |
| 1vr8A00 | 3.40.1000.20 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like | 0.50 | 35.0 | 3.38e-01 | 87.3% | 63.0% |
| 2lfiA00 | 2.60.40.4300 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 36.0 | 3.59e-01 | 74.6% | 84.4% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3282528 | 3844.2.1.1 ↗ | a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG | 0.56 | 42.0 | 3.49e-01 | 79.7% | 83.4% |
| 4964910 | 300.1.1.25 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › TbsP_N | 0.55 | 39.0 | 3.71e-01 | 72.9% | 98.6% |
| 5007172 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.55 | 38.0 | 3.68e-01 | 71.2% | 100.0% |
| 4427696 | 3844.2.1.1 ↗ | a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG | 0.55 | 44.0 | 3.48e-01 | 88.1% | 88.3% |
| 3841343 | 2484.1.1.239 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, PF27046, PF27073 | 0.54 | 45.0 | 3.04e-01 | 92.4% | 82.2% |
| 5020831 | 881.4.1.2 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 | 0.54 | 35.0 | 3.49e-01 | 84.7% | 61.6% |
| 3571382 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.54 | 47.0 | 3.12e-01 | 96.6% | 82.5% |
| 3780866 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.54 | 46.0 | 3.07e-01 | 94.9% | 82.8% |
| 3890518 | 2484.1.1.239 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, PF27046, PF27073 | 0.53 | 46.0 | 3.09e-01 | 97.5% | 82.2% |
| 3527214 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.53 | 46.0 | 3.13e-01 | 97.5% | 80.8% |
| 3283966 | 3844.2.1.1 ↗ | a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG | 0.53 | 41.0 | 3.36e-01 | 85.6% | 86.7% |
| 3287961 | 3844.2.1.1 ↗ | a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG | 0.53 | 41.0 | 3.22e-01 | 83.9% | 91.6% |
| 3610213 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 38.0 | 3.62e-01 | 75.4% | 95.7% |
| 3710596 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 39.0 | 3.72e-01 | 80.5% | 85.5% |
| 3287652 | 3844.2.1.1 ↗ | a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG | 0.52 | 41.0 | 3.25e-01 | 88.1% | 91.1% |
| 3734667 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 39.0 | 3.39e-01 | 78.8% | 92.8% |
| 3562870 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.51 | 44.0 | 2.99e-01 | 97.5% | 82.8% |
| 3602276 | 881.4.1.2 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 | 0.50 | 33.0 | 3.20e-01 | 85.6% | 57.8% |