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MG878892.2__AVI05045.1__X__00014

Bact-Vir

MG878892.2__AVI05045.1__X__00014

Identity

Accession:
MG878892 ↗
Kingdom:
phage

Quality

91.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autonotataviridae› Panjvirus› Salmonella_phage_vB_SpuP_Spp16

TaxID: 2081603

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-48
PDB
Domain cluster: rep: OK040794.1__UDL16748.1__SEA_ATUIN_154__00154__D2-50
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w40A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.78 52.0 3.24e-01 70.2% 92.5%
3id6A01 3.30.420.220 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.72 48.0 3.69e-01 70.2% 73.6%
2yzyA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.69 49.0 3.35e-01 76.6% 66.9%
2hh8A00 3.30.1810.10 Alpha Beta › 2-Layer Sandwich › YdfO-like fold › YdfO-like 0.68 54.0 3.98e-01 89.4% 50.4%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.67 57.0 4.60e-01 93.6% 93.3%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 53.0 4.01e-01 93.6% 75.4%
4ecnA01 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.67 55.0 4.30e-01 93.6% 90.3%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.67 49.0 3.53e-01 80.9% 57.4%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 4.90e-01 100.0% 68.2%
3obaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 54.0 3.92e-01 89.4% 96.0%
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 52.0 4.13e-01 87.2% 93.8%
3a8pB01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 56.0 4.29e-01 100.0% 69.8%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 46.0 3.35e-01 78.7% 86.0%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 55.0 4.38e-01 100.0% 68.7%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 49.0 4.01e-01 100.0% 47.1%
4le7A02 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.62 49.0 4.10e-01 87.2% 57.3%
2xwxA03 2.60.40.2550 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 49.0 3.90e-01 89.4% 93.9%
3e0rB01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 45.0 3.38e-01 80.9% 37.8%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.61 50.0 4.60e-01 100.0% 74.2%
2mhdA00 2.40.128.370 Mainly Beta › Beta Barrel › Lipocalin › 0.60 53.0 3.97e-01 97.9% 61.8%
4pdyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 47.0 3.76e-01 89.4% 80.8%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.51e-01 100.0% 79.0%
2ki8A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.59 51.0 3.79e-01 100.0% 47.2%
2w5eA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 43.0 3.94e-01 100.0% 58.5%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 50.0 3.81e-01 100.0% 42.7%
1bakA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.58e-01 93.6% 73.1%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.58 44.0 3.91e-01 91.5% 94.9%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.58 48.0 3.41e-01 100.0% 94.4%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 4.71e-01 100.0% 93.6%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.58 50.0 3.82e-01 100.0% 67.0%
4pjeE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 3.44e-01 85.1% 94.4%
3lb6D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 3.75e-01 89.4% 95.7%
1q8mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 3.21e-01 78.7% 86.8%
2cduA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 47.0 3.40e-01 100.0% 79.5%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 3.56e-01 89.4% 90.4%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.57 46.0 4.19e-01 100.0% 98.6%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.56 45.0 3.20e-01 100.0% 44.2%
2jmbA00 2.40.128.290 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 0.55 43.0 3.81e-01 93.6% 91.1%
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 4.35e-01 100.0% 91.3%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.55 46.0 3.74e-01 100.0% 49.5%
2yvlA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.54 48.0 4.51e-01 100.0% 86.2%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 44.0 3.77e-01 100.0% 64.0%
5wfiA01 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 3.49e-01 100.0% 41.3%
2e8yA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 45.0 3.53e-01 100.0% 45.5%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 4.04e-01 100.0% 72.3%
2rftA02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.53 45.0 2.89e-01 100.0% 22.2%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.53 41.0 4.14e-01 100.0% 91.7%
3t91B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 46.0 2.96e-01 100.0% 21.9%
3jcuB02 3.10.680.10 Alpha Beta › Roll › Photosystem II CP47 reaction center protein › Photosystem II CP47 reaction center protein 0.52 45.0 3.09e-01 100.0% 46.2%
2wmmA02 3.30.70.3500 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MukB, hinge domain 0.51 38.0 3.05e-01 80.9% 99.1%
3g7kA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 43.0 2.91e-01 100.0% 91.0%
3hjhA02 3.30.2060.10 Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain 0.50 42.0 3.51e-01 95.7% 100.0%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4155318 5.1.3.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b 0.82 57.0 3.33e-01 72.3% 18.5%
4975364 56.2.1.0 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT 0.78 70.0 6.27e-01 100.0% 86.2%
5017022 331.1.1.27 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CBS 0.73 54.0 3.30e-01 78.7% 18.2%
3961205 1.1.1.11 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › PE-PGRS_C 0.72 50.0 3.44e-01 74.5% 51.2%
4484607 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.70 60.0 3.50e-01 97.9% 47.6%
3997284 6043.1.1.4 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 0.70 50.0 4.53e-01 87.2% 57.1%
None — 0.69 59.0 3.51e-01 97.9% 51.6%
None — 0.69 59.0 3.69e-01 97.9% 47.6%
3363154 6043.1.1.4 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 0.69 51.0 4.16e-01 89.4% 44.0%
3369784 809.1.1.5 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › PHAF1 0.69 51.0 4.17e-01 89.4% 44.6%
None — 0.69 59.0 3.66e-01 97.9% 54.7%
5012768 5.1.10.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › DUF6849 0.69 50.0 4.51e-01 100.0% 55.4%
3289369 220.1.1.255 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_10 0.68 57.0 4.91e-01 100.0% 73.8%
4957336 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 54.0 3.20e-01 91.5% 20.7%
3337373 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.67 53.0 3.52e-01 87.2% 35.1%
4940711 7516.1.1.1 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase 0.67 39.0 2.47e-01 87.2% 12.0%
4310932 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.66 48.0 3.10e-01 83.0% 27.5%
3630433 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 58.0 4.37e-01 100.0% 68.7%
3478678 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 59.0 5.02e-01 100.0% 85.3%
3615429 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.65 54.0 5.36e-01 95.7% 86.0%
4004179 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.65 52.0 3.39e-01 93.6% 35.7%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 4.96e-01 100.0% 73.4%
3841970 6043.1.1.4 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 0.65 51.0 4.17e-01 89.4% 47.6%
3403716 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 56.0 4.19e-01 100.0% 77.5%
4936291 4.1.1.487 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7205 0.64 52.0 4.82e-01 100.0% 78.5%
3777243 220.1.1.161 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.63 57.0 4.02e-01 100.0% 50.4%
3436557 220.4.1.8 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › ZGRF1-like_N 0.63 57.0 4.83e-01 100.0% 86.7%
3250883 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 56.0 4.28e-01 100.0% 66.7%
3220403 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.16e-01 100.0% 72.4%
3247469 220.1.1.161 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.62 55.0 4.03e-01 100.0% 56.8%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.61 52.0 4.73e-01 100.0% 73.8%
5025364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 50.0 4.43e-01 100.0% 65.3%
3277614 319.1.1.16 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF26059 0.60 53.0 4.63e-01 97.9% 90.0%
4432457 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 49.0 4.45e-01 100.0% 68.6%
5055697 5.1.4.668 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_CGLA 0.60 54.0 3.24e-01 100.0% 20.0%
4952899 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 48.0 4.12e-01 100.0% 53.8%
3221103 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 52.0 4.10e-01 100.0% 69.5%
3287367 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.60 48.0 2.92e-01 85.1% 49.8%
4026222 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 52.0 3.69e-01 100.0% 66.2%
3987498 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.24e-01 100.0% 57.6%
5043979 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.43e-01 100.0% 77.1%
4998113 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.59 49.0 5.05e-01 95.7% 100.0%
4975714 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 45.0 4.34e-01 97.9% 76.4%
5028741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 46.0 4.53e-01 100.0% 87.3%
3199835 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 50.0 4.32e-01 100.0% 81.3%
3175445 633.23.1.9 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.58 52.0 3.29e-01 100.0% 21.8%
3283745 319.1.1.16 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF26059 0.57 51.0 4.39e-01 100.0% 82.7%
4381495 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 49.0 4.05e-01 100.0% 54.4%
4391995 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.56 49.0 4.06e-01 100.0% 57.6%
5036089 3407.1.1.2 ↗ mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc 0.56 50.0 3.64e-01 100.0% 60.8%
4682440 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.56 48.0 3.89e-01 100.0% 51.6%
4438946 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.56 48.0 3.99e-01 100.0% 57.6%
4656128 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.55 47.0 3.15e-01 100.0% 25.8%
4188663 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.55 46.0 3.75e-01 100.0% 51.6%
5066224 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.54 44.0 3.77e-01 100.0% 56.7%
3953943 9.27.1.1 ↗ beta barrels › Lipocalins/Streptavidin › LpqH › LpqH › Myco_19_kDa 0.54 46.0 3.61e-01 100.0% 98.2%
162092 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.54 45.0 3.34e-01 100.0% 36.6%
3300074 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 45.0 4.40e-01 100.0% 87.0%
4937389 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.53 43.0 3.45e-01 100.0% 46.4%
4075769 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.52 42.0 4.09e-01 100.0% 83.6%
3673317 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 41.0 4.01e-01 100.0% 83.6%
4004815 4.1.1.166 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2314 0.50 41.0 3.20e-01 100.0% 46.3%
3768603 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.50 36.0 2.79e-01 85.1% 76.3%