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MG878892.2__AVI05069.1__X__00043
Bact-VirMG878892.2__AVI05069.1__X__00043
Identity
- Accession:
- MG878892 ↗
- Kingdom:
- phage
Quality
59.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autonotataviridae›
Panjvirus›
Salmonella_phage_vB_SpuP_Spp16
TaxID: 2081603
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1071-1135
D2
medium
residues 62-178
D3
medium
residues 386-509_684-711
Domain cluster:
rep: OR208619.1__WKL13477.1__PhageSB_046__00030__D633-758_895-918
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.64 | 34.0 | 4.00e-01 | 98.7% | 71.6% |
| 1t72A02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.63 | 29.0 | 3.46e-01 | 98.7% | 62.2% |
| 2pbeA02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.59 | 40.0 | 4.31e-01 | 92.8% | 81.0% |
| 1jogA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.57 | 34.0 | 3.64e-01 | 96.1% | 65.2% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.57 | 31.0 | 3.55e-01 | 98.7% | 70.9% |
| 4xpwA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.56 | 43.0 | 4.56e-01 | 94.1% | 91.6% |
| 2b5uA02 | 1.10.287.620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins | 0.56 | 32.0 | 3.16e-01 | 98.7% | 52.2% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.55 | 31.0 | 4.02e-01 | 98.0% | 98.8% |
| 4gyvE00 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.55 | 42.0 | 3.77e-01 | 80.3% | 91.6% |
| 3wvoC02 | 1.10.132.100 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.54 | 34.0 | 3.71e-01 | 81.6% | 73.8% |
| 2q58B00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 37.0 | 2.88e-01 | 73.7% | 59.0% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3960630 | 1075.3.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold | 0.66 | 36.0 | 3.68e-01 | 96.7% | 53.3% |
| 3236141 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.59 | 35.0 | 3.76e-01 | 84.9% | 65.9% |
| 3223270 | 706.1.1.2 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › MIEAP | 0.57 | 45.0 | 4.15e-01 | 84.9% | 96.0% |
| 4029181 | 5050.1.1.28 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › BT1 | 0.55 | 43.0 | 3.08e-01 | 81.6% | 88.4% |
| 4186195 | 1079.1.1.8 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › LysE | 0.53 | 43.0 | 3.88e-01 | 86.2% | 77.1% |
| 3708249 | 604.5.1.31 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TRAM_LAG1_CLN8 | 0.53 | 40.0 | 3.41e-01 | 92.8% | 47.1% |
| 3191794 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.52 | 41.0 | 3.51e-01 | 83.6% | 69.8% |
| 3743961 | 603.1.1.17 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE | 0.52 | 36.0 | 3.36e-01 | 93.4% | 55.4% |
| 4656923 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.50 | 38.0 | 3.55e-01 | 80.3% | 94.4% |
| 5083938 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.50 | 40.0 | 3.78e-01 | 96.7% | 68.9% |
D4
medium
residues 533-610_637-671
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4f0uA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.60 | 49.0 | 4.39e-01 | 88.5% | 71.2% |
| 2pejA00 | 1.10.1200.210 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX | 0.56 | 41.0 | 4.20e-01 | 100.0% | 79.8% |
| 2w31A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 45.0 | 4.13e-01 | 92.0% | 76.3% |
| 1i4dA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.52 | 37.0 | 3.09e-01 | 72.6% | 82.4% |
| 2oauA01 | 1.10.287.1260 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 34.0 | 3.55e-01 | 71.7% | 73.5% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.51 | 33.0 | 3.39e-01 | 93.8% | 66.4% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4937313 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.63 | 46.0 | 5.06e-01 | 92.9% | 94.4% |
| 4992051 | 5069.1.3.1 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt | 0.58 | 35.0 | 3.25e-01 | 95.6% | 46.2% |
| 3255272 | 5076.1.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier | 0.52 | 40.0 | 3.17e-01 | 82.3% | 77.1% |
| 3815117 | 1065.1.1.0 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain | 0.52 | 31.0 | 3.15e-01 | 97.3% | 58.2% |
| 3582217 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 36.0 | 3.31e-01 | 71.7% | 65.5% |
| 3232705 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.51 | 34.0 | 3.42e-01 | 99.1% | 67.0% |
D5
medium
residues 752-871