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MG913376.1__AVJ48884.1__X__00022

Bact-Vir

MG913376.1__AVJ48884.1__X__00022

Identity

Accession:
MG913376 ↗
Kingdom:
phage

Quality

68.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cequinquevirus› Lactobacillus_phage_PMBT4

TaxID: 2099651

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-78
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m6pA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.61 36.0 4.34e-01 98.7% 95.7%
4xhyA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 50.0 3.98e-01 100.0% 70.2%
1vziA01 2.20.28.100 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Desulphoferrodoxin, N-terminal domain 0.56 29.0 3.70e-01 73.3% 97.4%
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.55 47.0 3.65e-01 96.0% 54.1%
1tdjA03 3.40.1020.10 Alpha Beta › 3-Layer(aba) Sandwich › Biosynthetic Threonine Deaminase; domain 3 › Biosynthetic Threonine Deaminase; Domain 3 0.55 44.0 3.46e-01 88.0% 80.1%
2kbnA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 40.0 3.60e-01 100.0% 56.0%
3ir9A02 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.51 36.0 3.15e-01 74.7% 48.3%
3pubA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 36.0 2.96e-01 77.3% 99.4%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3385437 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.77 61.0 5.50e-01 98.7% 63.0%
3838774 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.75 60.0 5.29e-01 98.7% 60.0%
4254576 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.75 62.0 5.59e-01 94.7% 66.0%
2392036 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.74 63.0 5.40e-01 98.7% 60.2%
4674798 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.71 63.0 5.50e-01 100.0% 65.5%
4032331 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.71 63.0 5.43e-01 97.3% 63.5%
4480497 239.1.1.6 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.59 40.0 4.15e-01 76.0% 75.7%
4975578 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.57 49.0 3.33e-01 96.0% 31.3%
4392318 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.56 49.0 3.63e-01 96.0% 60.5%
5028788 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.55 48.0 3.87e-01 96.0% 60.7%