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MG925354.1__AVJ50739.1__SEA_OGOPOGO_100__00100

Bact-Vir

MG925354.1__AVJ50739.1__SEA_OGOPOGO_100__00100

Identity

Accession:
MG925354 ↗
Kingdom:
phage

Quality

78.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-91
PDB
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2djhA00 3.30.2310.30 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › Colicin E5 C-terminal ribonuclease domain (CRD) 0.80 67.0 5.99e-01 90.0% 84.4%
3bpqD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.75 59.0 5.56e-01 85.7% 89.5%
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.75 60.0 5.90e-01 88.6% 94.8%
4u7aA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.73 44.0 2.76e-01 90.0% 12.1%
2ghsA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.71 41.0 2.68e-01 88.6% 13.6%
3dsmA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.70 48.0 3.05e-01 91.4% 15.0%
4cc9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 45.0 2.90e-01 88.6% 15.6%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 51.0 4.08e-01 92.9% 43.3%
1fblA02 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.63 44.0 3.23e-01 91.4% 26.7%
1itvA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.63 41.0 2.97e-01 90.0% 23.6%
1genA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.63 43.0 3.15e-01 91.4% 25.0%
2l1sA00 3.10.450.160 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › inner membrane protein cigr 0.63 44.0 4.19e-01 74.3% 80.7%
3c7xA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.62 42.0 3.06e-01 91.4% 25.0%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 42.0 2.76e-01 88.6% 16.7%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 41.0 2.72e-01 92.9% 16.1%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 33.0 3.85e-01 80.0% 78.7%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.60 34.0 3.60e-01 88.6% 62.7%
6fcvB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 45.0 2.84e-01 97.1% 15.6%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 43.0 2.79e-01 90.0% 16.9%
4ew5A00 3.10.450.160 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › inner membrane protein cigr 0.58 41.0 3.66e-01 98.6% 51.0%
3sxxD02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 4.15e-01 92.9% 81.7%
2bolB02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 41.0 3.35e-01 74.3% 76.6%
5h1kB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 48.0 3.04e-01 90.0% 21.1%
4immA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 43.0 2.75e-01 90.0% 17.2%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.56 46.0 2.94e-01 91.4% 20.4%
3ow8C00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 44.0 2.85e-01 90.0% 19.7%
3vgzC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 2.94e-01 90.0% 20.1%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 2.81e-01 95.7% 30.9%
5ov3B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.83e-01 88.6% 23.4%
1jqpA01 2.40.128.80 Mainly Beta › Beta Barrel › Lipocalin › Cathepsin C, exclusion domain 0.53 43.0 3.72e-01 90.0% 81.2%
4q1vA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.53 43.0 2.60e-01 88.6% 15.0%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 44.0 4.08e-01 98.6% 92.4%
1so7A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 40.0 2.70e-01 94.3% 24.7%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.51 36.0 3.70e-01 97.1% 76.8%
2b5nB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 40.0 2.68e-01 92.9% 19.6%
4h5iB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 41.0 2.67e-01 91.4% 21.2%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5061645 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.89 73.0 7.68e-01 85.7% 98.4%
5042309 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.77 63.0 5.79e-01 88.6% 83.3%
2089781 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.77 69.0 6.39e-01 100.0% 85.2%
4941220 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.77 64.0 6.12e-01 90.0% 95.0%
5057301 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.77 43.0 2.92e-01 88.6% 16.0%
3908602 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.75 46.0 2.83e-01 88.6% 11.8%
5027650 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.74 64.0 6.61e-01 98.6% 100.0%
None 0.73 46.0 2.85e-01 88.6% 12.6%
3531747 5.1.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.73 45.0 3.18e-01 90.0% 20.7%
3933078 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.73 44.0 2.53e-01 91.4% 6.1%
3361063 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.72 46.0 3.05e-01 88.6% 17.3%
3254907 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.70 43.0 2.64e-01 88.6% 11.0%
3763184 5.1.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.70 44.0 3.18e-01 90.0% 22.5%
3457581 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.69 53.0 3.30e-01 90.0% 15.8%
3579705 5.1.11.29 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40, HELP, Beta-prop_EML 0.69 46.0 2.94e-01 90.0% 14.5%
3651019 5.1.4.101 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 0.69 52.0 3.46e-01 90.0% 20.7%
3276702 5.1.4.319 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_1st 0.68 47.0 2.80e-01 80.0% 10.1%
3629602 5.1.5.148 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, HELP, Beta-prop_EML 0.68 46.0 2.92e-01 90.0% 14.4%
4023242 220.1.1.187 beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.68 47.0 3.83e-01 91.4% 40.0%
3260479 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 57.0 3.45e-01 91.4% 22.0%
4026544 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 41.0 2.70e-01 88.6% 14.1%
3682129 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.67 51.0 3.22e-01 90.0% 15.8%
3665959 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.66 50.0 3.17e-01 90.0% 15.4%
3825410 5.1.4.466 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_1st, Beta-prop_WDR11_2nd 0.66 45.0 2.53e-01 78.6% 5.8%
4422293 4959.1.1.0 a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit 0.66 46.0 3.78e-01 72.9% 57.3%
4028583 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 43.0 2.80e-01 88.6% 15.7%
None 0.64 54.0 3.38e-01 90.0% 19.2%
3948032 3155.1.1.1 a+b two layers › Uncharacterized protein yohN › Uncharacterized protein yohN › Uncharacterized protein yohN › RcnB 0.64 45.0 4.41e-01 74.3% 87.2%
3875021 5.1.4.158 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_HPS5 0.64 53.0 3.27e-01 91.4% 20.5%
3436009 5.1.4.101 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 0.63 53.0 3.57e-01 91.4% 28.6%
3395174 5.1.4.158 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_HPS5 0.63 52.0 3.32e-01 91.4% 25.4%
3576508 234.3.1.0 a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.62 53.0 5.35e-01 98.6% 94.3%
5059089 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 44.0 2.87e-01 91.4% 17.3%
3716517 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 47.0 2.93e-01 92.9% 14.7%
3681536 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 45.0 2.75e-01 88.6% 12.2%
3756624 5.1.4.55 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ELYS-bb 0.60 46.0 2.71e-01 88.6% 10.4%
3605586 5.1.3.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.60 54.0 3.36e-01 100.0% 92.4%
3895142 5.1.3.216 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_HPS5 0.60 49.0 3.62e-01 91.4% 43.7%
3697771 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 44.0 2.71e-01 91.4% 13.2%
185723 3388.1.1.0 0.58 41.0 3.66e-01 98.6% 51.0%
4130525 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 44.0 2.75e-01 90.0% 13.5%
3800021 5.1.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.58 49.0 3.45e-01 91.4% 31.9%
3211505 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.57 43.0 2.68e-01 88.6% 14.7%
3586475 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 45.0 2.79e-01 88.6% 33.6%
4956008 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.57 43.0 2.68e-01 90.0% 15.8%
3490808 5.1.4.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.56 46.0 2.86e-01 90.0% 16.5%
4357447 5.1.4.158 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_HPS5 0.56 51.0 3.12e-01 98.6% 89.9%
3651128 5.1.4.334 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IFT140_1st 0.56 45.0 2.55e-01 90.0% 9.9%
3263689 5.1.4.348 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_1st 0.56 43.0 2.72e-01 90.0% 16.6%
3700695 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 43.0 2.74e-01 90.0% 17.1%
4981443 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.55 43.0 2.64e-01 90.0% 14.7%
3773428 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 46.0 2.65e-01 90.0% 9.9%
3413325 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 2.77e-01 90.0% 16.1%
4216416 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.55 43.0 2.64e-01 90.0% 14.1%
3781294 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 43.0 2.68e-01 88.6% 16.8%
4011732 5.1.4.446 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_WDR36-Utp21_2nd, Beta-prop_WDR36-Utp21_1st 0.55 46.0 2.58e-01 91.4% 9.9%
3441990 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 45.0 2.85e-01 91.4% 18.1%
3999169 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.55 43.0 2.75e-01 90.0% 17.6%
3833207 5.1.4.319 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_1st 0.55 45.0 2.71e-01 90.0% 15.4%
5077760 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 45.0 2.71e-01 91.4% 14.6%
3718492 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 41.0 2.82e-01 88.6% 23.2%
3998928 5.1.5.236 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR3_1st 0.54 42.0 3.04e-01 90.0% 30.3%
3866991 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.53 43.0 2.68e-01 95.7% 27.0%
4940077 5.1.5.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.53 43.0 2.71e-01 90.0% 16.3%
3586673 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 44.0 2.74e-01 90.0% 18.2%
4000086 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 47.0 2.62e-01 97.1% 42.0%
3484788 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 44.0 2.61e-01 88.6% 15.2%
3224107 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 42.0 2.63e-01 90.0% 20.0%
5035116 5.1.4.559 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta_propel 0.52 43.0 2.53e-01 90.0% 14.1%
4961460 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.52 46.0 2.87e-01 98.6% 68.3%
3734559 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 42.0 2.62e-01 90.0% 16.7%
3502859 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 2.86e-01 92.9% 27.8%
3775455 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 40.0 2.40e-01 95.7% 19.6%
None 0.51 41.0 2.65e-01 91.4% 21.1%
3249061 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.50 41.0 2.64e-01 91.4% 18.5%
3494789 5.1.4.320 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.50 42.0 2.60e-01 91.4% 19.5%
None 0.50 40.0 2.38e-01 95.7% 19.7%