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MG944234.1__AVO24186.1__X__00022

Bact-Vir

MG944234.1__AVO24186.1__X__00022

Identity

Accession:
MG944234 ↗
Kingdom:
phage

Quality

88.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 299-396
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dq3A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.59 42.0 3.48e-01 75.5% 100.0%
5o9iA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.58 42.0 3.51e-01 75.5% 100.0%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.57 42.0 3.49e-01 76.5% 100.0%
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.56 43.0 3.60e-01 81.6% 100.0%
4dguA01 2.60.40.2680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 40.0 3.83e-01 76.5% 81.2%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 41.0 3.66e-01 81.6% 90.9%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4964214 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.62 27.0 3.35e-01 72.4% 65.5%
3503838 4030.1.1.0 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.58 33.0 3.47e-01 90.8% 60.0%
4928815 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 35.0 4.23e-01 76.5% 95.4%
4585224 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.54 35.0 3.50e-01 87.8% 64.3%
3591845 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 36.0 2.43e-01 73.5% 95.1%
3392569 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.50 29.0 2.72e-01 94.9% 41.6%
D2 high residues 407-504
PDB
D3 medium residues 1-98_201-224
PDB
D4 medium residues 99-168_225-254
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kg0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 42.0 4.32e-01 70.0% 66.0%
4a8xA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.66 40.0 4.27e-01 70.0% 69.3%
1nxiA00 3.30.70.970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like 0.60 37.0 3.42e-01 70.0% 47.0%
2vxaA00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.60 39.0 4.65e-01 99.0% 100.0%
2rb7A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 41.0 4.05e-01 70.0% 80.4%
6urtA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 40.0 4.21e-01 70.0% 81.8%
3lccA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 38.0 3.01e-01 99.0% 31.0%
5wy8B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 39.0 3.83e-01 70.0% 64.3%
2ftrA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 3.90e-01 70.0% 68.9%
1tr0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 38.0 3.82e-01 70.0% 68.9%
2j5aA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.56 38.0 3.80e-01 70.0% 68.9%
1d5yB03 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.56 44.0 3.76e-01 85.0% 79.2%
5xoyB02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 38.0 3.79e-01 70.0% 79.4%
6vt2A03 2.60.40.4140 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 38.0 3.62e-01 70.0% 62.5%
3hp7A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 41.0 3.26e-01 80.0% 43.8%
3gk6A00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.54 42.0 3.67e-01 84.0% 83.7%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.52 33.0 3.43e-01 92.0% 67.7%
4ft4A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 39.0 2.71e-01 80.0% 37.4%
3cedA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 35.0 3.58e-01 70.0% 86.7%
4i5tB00 3.30.428.70 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › ATP adenylyltransferase 0.50 38.0 2.77e-01 82.0% 52.5%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4976260 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.64 38.0 4.11e-01 70.0% 69.4%
3739841 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.63 43.0 4.09e-01 70.0% 66.1%
3744219 4146.1.1.0 alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.62 42.0 4.29e-01 70.0% 76.0%
4019555 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.62 42.0 4.11e-01 70.0% 67.3%
3822124 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.61 42.0 4.15e-01 70.0% 70.5%
3306490 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.61 42.0 4.08e-01 70.0% 68.2%
4978418 886.1.1.3 a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Cass2 0.61 48.0 4.14e-01 86.0% 85.6%
3956526 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.61 41.0 4.09e-01 70.0% 70.5%
3307617 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.60 41.0 4.00e-01 70.0% 67.3%
3588046 304.55.1.14 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp 0.60 52.0 3.85e-01 96.0% 89.2%
3986356 304.55.1.14 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp 0.59 52.0 3.80e-01 97.0% 84.6%
None 0.59 52.0 3.87e-01 97.0% 90.0%
3598810 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.59 46.0 3.80e-01 84.0% 70.0%
3187062 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.59 39.0 3.93e-01 70.0% 65.7%
1312370 304.28.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.58 40.0 3.84e-01 70.0% 68.4%
5004080 886.1.1.2 a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.58 45.0 4.09e-01 84.0% 92.9%
3957946 256.1.1.12 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › SOUL 0.58 38.0 3.95e-01 98.0% 73.3%
4928686 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 38.0 4.02e-01 70.0% 75.6%
3429776 10.10.1.1 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.57 36.0 3.23e-01 88.0% 43.6%
3513788 886.1.1.2 a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.57 45.0 3.95e-01 85.0% 81.9%
4469156 886.1.1.2 a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.57 44.0 3.89e-01 85.0% 82.6%
3690383 304.4.1.58 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dehydratase_hem 0.57 39.0 3.85e-01 93.0% 66.7%
1314824 304.28.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.57 40.0 3.85e-01 94.0% 64.0%
4997043 886.1.1.2 a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.57 44.0 3.87e-01 85.0% 82.6%
3495236 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.56 38.0 3.95e-01 96.0% 75.6%
3826015 387.1.5.15 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SLR1-BP 0.56 38.0 4.33e-01 98.0% 100.0%
3401074 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.56 38.0 3.68e-01 70.0% 67.0%
3244886 312.1.1.17 a+b three layers › HIT-like › HIT-related › HIT-related › GalP_UDP_transf+GalP_UDP_tr_C 0.56 46.0 3.22e-01 90.0% 60.3%
4982112 886.1.1.2 a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.56 44.0 3.87e-01 86.0% 85.8%
5043659 886.1.1.2 a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.56 44.0 3.89e-01 85.0% 86.7%
3398289 390.1.1.8 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_4 0.56 40.0 4.14e-01 85.0% 80.0%
3697090 323.1.1.12 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › TRI-like_N 0.56 38.0 3.13e-01 70.0% 79.5%
5023942 304.48.1.32 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.55 41.0 3.53e-01 79.0% 98.8%
3586334 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.55 36.0 3.79e-01 92.0% 74.4%
3231163 390.1.1.4 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › MANEC 0.55 39.0 4.16e-01 83.0% 87.1%
None 0.54 39.0 3.37e-01 75.0% 95.2%
3897288 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.54 36.0 3.75e-01 97.0% 71.6%
3725630 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.54 35.0 3.88e-01 70.0% 83.7%
4027899 390.1.1.0 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.54 37.0 3.93e-01 95.0% 81.8%
3192549 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.54 39.0 3.92e-01 81.0% 73.3%
4666981 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.54 37.0 2.89e-01 70.0% 65.9%
3930134 390.1.1.1 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.53 39.0 4.05e-01 94.0% 83.2%
3193141 390.1.1.1 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.53 36.0 3.81e-01 94.0% 81.2%
3942714 886.1.1.2 a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.53 42.0 3.57e-01 87.0% 77.6%
2464383 2003.1.5.37 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RsmJ 0.52 46.0 3.34e-01 98.0% 44.6%
3469259 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.52 34.0 3.44e-01 70.0% 67.0%
4588619 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.51 39.0 2.57e-01 80.0% 30.1%
4022579 314.1.1.28 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › GDH_2nd 0.51 39.0 3.04e-01 82.0% 73.0%
3633584 304.8.1.77 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GDH_2nd 0.51 40.0 3.14e-01 83.0% 78.6%
D5 medium residues 169-200_255-298
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 3.58e-01 98.7% 41.4%
1e3hA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.57 42.0 2.99e-01 78.9% 95.6%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.56 39.0 3.60e-01 75.0% 58.8%
6fyqA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 38.0 2.95e-01 73.7% 80.1%
4pe3A00 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.55 48.0 3.20e-01 98.7% 52.7%
5aq1A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 42.0 2.94e-01 94.7% 89.2%
6lw5A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.50 42.0 2.87e-01 94.7% 50.3%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None 0.64 44.0 3.74e-01 71.1% 55.8%
3670675 7512.1.1.77 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_N 0.63 45.0 2.91e-01 76.3% 39.2%
3760601 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.63 51.0 3.34e-01 86.8% 66.5%
3698724 245.2.1.0 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.59 47.0 3.74e-01 84.2% 48.6%
3430929 198.1.1.4 alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 0.57 40.0 3.31e-01 76.3% 84.7%
4029803 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 38.0 3.26e-01 71.1% 62.3%
3592627 601.23.1.0 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.56 46.0 3.14e-01 88.2% 42.3%
4025072 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.56 40.0 3.54e-01 76.3% 79.1%
3587510 101.1.1.32 alpha arrays › HTH › HTH › Three-helical HTH › Sigma54_DBD 0.56 38.0 3.17e-01 72.4% 56.0%
3718200 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.56 39.0 3.39e-01 73.7% 66.4%
3882687 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 49.0 3.18e-01 100.0% 38.5%
3244074 2498.1.1.5 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13,Peptidase_M13_N 0.52 43.0 2.62e-01 94.7% 29.7%
3999372 198.1.1.4 alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 0.52 36.0 3.11e-01 72.4% 77.6%