Back to structures

MG962366.1__AVO24969.1__SEA_FINCH_26__00026

Bact-Vir

MG962366.1__AVO24969.1__SEA_FINCH_26__00026

Identity

Accession:
MG962366 ↗
Kingdom:
phage

Quality

94.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-85
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.79 54.0 6.12e-01 100.0% 95.7%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 50.0 4.92e-01 100.0% 65.2%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.72 55.0 5.70e-01 100.0% 88.1%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 51.0 5.28e-01 98.4% 81.4%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 50.0 4.99e-01 100.0% 72.7%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 49.0 5.03e-01 92.2% 77.0%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 51.0 4.99e-01 100.0% 70.4%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 51.0 5.18e-01 100.0% 82.3%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 52.0 5.59e-01 98.4% 98.1%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 4.96e-01 100.0% 71.4%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.66 41.0 4.31e-01 82.8% 70.2%
4oijA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 45.0 4.44e-01 92.2% 64.8%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 45.0 4.50e-01 90.6% 68.7%
3ptaA04 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.63 56.0 4.02e-01 100.0% 45.7%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 46.0 4.61e-01 92.2% 75.8%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 5.19e-01 100.0% 90.3%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.62 50.0 5.06e-01 100.0% 90.5%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 4.26e-01 100.0% 53.7%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 43.0 4.57e-01 87.5% 87.5%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 43.0 4.34e-01 93.8% 76.6%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 52.0 4.16e-01 100.0% 63.6%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 42.0 4.70e-01 93.8% 95.9%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 42.0 4.51e-01 89.1% 85.7%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 47.0 4.38e-01 85.9% 93.7%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.59 42.0 4.37e-01 89.1% 87.5%
3d31A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 45.0 4.36e-01 93.8% 74.6%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 43.0 3.67e-01 79.7% 94.2%
3c7fA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 46.0 2.93e-01 89.1% 33.3%
2xg5A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 44.0 3.89e-01 81.2% 94.6%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 50.0 4.61e-01 100.0% 80.5%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 44.0 4.35e-01 92.2% 79.1%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.57 47.0 4.14e-01 93.8% 91.8%
1xf1A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 3.89e-01 87.5% 98.0%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 45.0 4.29e-01 85.9% 98.6%
2hczX02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.56 44.0 3.84e-01 89.1% 75.0%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.56 49.0 4.72e-01 98.4% 100.0%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 45.0 4.41e-01 93.8% 81.7%
4d7pA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.55 39.0 3.51e-01 78.1% 82.3%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 44.0 3.92e-01 100.0% 61.7%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.75e-01 92.2% 63.3%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.54 46.0 3.76e-01 93.8% 73.7%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 42.0 3.74e-01 85.9% 86.2%
4ntdA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 42.0 3.01e-01 89.1% 80.8%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.60e-01 90.6% 75.5%
3kbgA02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.53 40.0 4.34e-01 81.2% 98.1%
2hcjB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 41.0 3.71e-01 100.0% 60.6%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 47.0 4.09e-01 98.4% 93.7%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 43.0 3.43e-01 92.2% 58.3%
1sulB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 39.0 2.77e-01 79.7% 90.3%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 44.0 2.75e-01 98.4% 37.3%
3q2iA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 42.0 3.17e-01 93.8% 51.2%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.51 41.0 3.82e-01 90.6% 91.5%
4flnA02 3.20.190.20 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › 0.50 43.0 3.33e-01 98.4% 84.2%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3264879 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 55.0 5.41e-01 100.0% 67.1%
3902990 4.1.1.311 beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.77 61.0 5.41e-01 100.0% 60.0%
3846130 4.1.1.311 beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.77 61.0 4.18e-01 100.0% 26.3%
3853598 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.77 61.0 5.60e-01 100.0% 67.5%
4024629 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 47.0 5.61e-01 89.1% 100.0%
3741680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 56.0 5.95e-01 100.0% 90.9%
3660358 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 54.0 5.60e-01 100.0% 83.3%
4120629 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 57.0 5.43e-01 100.0% 72.0%
3991073 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 48.0 5.10e-01 92.2% 80.0%
3790904 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.72 46.0 4.77e-01 84.4% 70.0%
4943273 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 53.0 5.32e-01 100.0% 80.0%
3931055 4.1.1.311 beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.69 58.0 5.56e-01 100.0% 80.0%
3411042 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 56.0 5.82e-01 98.4% 95.0%
5031165 4.1.1.93 beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.68 53.0 5.19e-01 100.0% 78.6%
4014812 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.68 46.0 4.78e-01 93.8% 76.7%
3228213 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.68 46.0 4.61e-01 89.1% 69.2%
3200432 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 41.0 4.82e-01 81.2% 97.5%
4215717 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 53.0 5.20e-01 100.0% 79.7%
3399965 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 52.0 4.70e-01 100.0% 62.2%
3694693 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.66 48.0 4.85e-01 92.2% 76.9%
4523548 4.8.1.35 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.65 57.0 5.17e-01 96.9% 75.3%
5048974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 54.0 4.52e-01 100.0% 54.5%
3557649 4.8.1.20 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.63 50.0 4.25e-01 100.0% 52.4%
3937478 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 52.0 4.38e-01 100.0% 53.6%
3761318 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.62 51.0 4.98e-01 100.0% 81.4%
5081654 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.62 42.0 4.33e-01 96.9% 75.0%
3750522 4.1.1.218 beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.62 50.0 4.17e-01 100.0% 50.9%
5052256 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.57e-01 100.0% 62.1%
5053021 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.62 46.0 4.17e-01 81.2% 66.7%
3214162 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 43.0 4.42e-01 89.1% 76.7%
3927411 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 41.0 4.67e-01 92.2% 100.0%
145843 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.61 51.0 4.26e-01 100.0% 53.7%
4549698 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.60 50.0 4.36e-01 100.0% 62.1%
3912620 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.58 52.0 4.80e-01 98.4% 95.0%
3811281 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 46.0 4.18e-01 85.9% 78.8%
3392529 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.58 48.0 4.26e-01 90.6% 90.0%
3881192 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 51.0 3.76e-01 100.0% 39.4%
5030269 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 46.0 4.08e-01 89.1% 72.6%
3242411 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.57 48.0 4.04e-01 93.8% 83.6%
3701382 312.1.1.8 a+b three layers › HIT-like › HIT-related › HIT-related › DcpS_C 0.57 49.0 3.28e-01 96.9% 95.3%
3537919 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.57 47.0 4.25e-01 93.8% 95.6%
4426470 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 48.0 4.66e-01 93.8% 92.9%
3997130 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 50.0 4.30e-01 100.0% 81.0%
3264985 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 34.0 3.19e-01 100.0% 51.2%
5045871 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.54 41.0 4.05e-01 82.8% 97.1%
3446646 11.1.1.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Expansin_C 0.54 39.0 3.76e-01 76.6% 97.3%
3796645 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 44.0 2.75e-01 90.6% 95.1%
4608521 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.54 39.0 2.87e-01 81.2% 73.0%
4495413 2.8.1.0 beta barrels › OB-fold › mu transposases-C › mu transposases-C 0.54 43.0 4.18e-01 87.5% 88.6%
4634274 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.54 40.0 3.42e-01 79.7% 92.4%
4314504 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 46.0 3.67e-01 100.0% 81.5%
3664404 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 42.0 2.52e-01 89.1% 93.8%
4011051 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 46.0 3.46e-01 98.4% 97.5%
3704939 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 3.82e-01 90.6% 84.4%
4672063 2.1.1.48 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C 0.53 39.0 4.09e-01 82.8% 100.0%
3185221 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 43.0 2.65e-01 95.3% 27.7%
3794092 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.52 44.0 3.84e-01 98.4% 83.8%
4500383 316.1.1.26 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › SMODS 0.52 41.0 3.06e-01 90.6% 74.6%
None 0.52 45.0 2.72e-01 98.4% 35.8%
3738480 2485.1.1.35 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 0.51 43.0 3.87e-01 98.4% 89.5%
4362720 2.1.1.48 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C 0.51 39.0 4.04e-01 84.4% 100.0%
3186806 2485.1.1.35 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 0.51 43.0 3.82e-01 98.4% 83.7%
4206425 2.1.1.48 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C 0.51 39.0 4.10e-01 85.9% 100.0%
4951953 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.51 42.0 3.05e-01 95.3% 62.1%
3658595 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.51 42.0 4.13e-01 93.8% 94.3%
3260242 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 37.0 3.36e-01 81.2% 84.2%