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MG962366.1__AVO25063.1__SEA_FINCH_133__00133

Bact-Vir

MG962366.1__AVO25063.1__SEA_FINCH_133__00133

Identity

Accession:
MG962366 ↗
Kingdom:
phage

Quality

84.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Finchvirus› Rhodococcus_phage_Finch

TaxID: 2094144

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-89
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4usoA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.68 54.0 4.23e-01 88.7% 99.3%
8badA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.67 50.0 3.89e-01 82.3% 97.9%
3h41A03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.66 53.0 4.21e-01 88.7% 46.8%
4fk5A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 57.0 3.65e-01 100.0% 41.7%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 56.0 3.53e-01 100.0% 48.2%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 46.0 2.99e-01 80.6% 26.1%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.62 47.0 3.88e-01 88.7% 45.1%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 51.0 4.09e-01 100.0% 45.4%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 42.0 2.76e-01 74.2% 27.4%
5h9kA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 49.0 3.85e-01 96.8% 75.3%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 51.0 3.34e-01 100.0% 46.3%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 50.0 4.07e-01 100.0% 51.9%
2hzmA02 2.20.140.20 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › 0.59 45.0 4.13e-01 85.5% 96.5%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 39.0 3.91e-01 71.0% 69.7%
3dsoA00 2.40.10.300 Mainly Beta › Beta Barrel › Thrombin, subunit H › Copper resistance protein K 0.58 38.0 3.75e-01 83.9% 63.6%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 39.0 3.83e-01 71.0% 76.1%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 49.0 4.17e-01 96.8% 98.1%
2p39A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 45.0 3.53e-01 88.7% 88.0%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 48.0 3.95e-01 100.0% 50.4%
4u3qB00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.57 46.0 4.05e-01 95.2% 96.0%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 43.0 4.33e-01 83.9% 98.4%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.56 39.0 4.17e-01 74.2% 87.0%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 47.0 4.49e-01 100.0% 96.1%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.56 44.0 4.42e-01 90.3% 90.8%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.56 42.0 4.11e-01 83.9% 100.0%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 4.37e-01 90.3% 87.3%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.51e-01 88.7% 91.7%
2wfwA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 38.0 3.97e-01 72.6% 94.8%
7zoiA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 40.0 3.36e-01 80.6% 99.2%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 41.0 3.62e-01 82.3% 99.0%
3kl7A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 41.0 2.88e-01 82.3% 96.8%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.30e-01 96.8% 80.8%
4h0oA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 42.0 3.18e-01 88.7% 38.8%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 3.91e-01 82.3% 100.0%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.54 43.0 4.34e-01 90.3% 100.0%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 39.0 2.95e-01 82.3% 57.6%
1lvoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 38.0 3.52e-01 80.6% 89.8%
1xeaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 38.0 2.72e-01 77.4% 69.8%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.23e-01 100.0% 51.9%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 38.0 2.86e-01 82.3% 56.7%
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.52 40.0 3.04e-01 90.3% 68.9%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.52 37.0 3.96e-01 79.0% 92.3%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.51 44.0 3.82e-01 100.0% 68.6%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 37.0 3.54e-01 79.0% 89.3%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.51 42.0 4.05e-01 100.0% 93.4%
4pbpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.03e-01 100.0% 69.9%
2sliA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 40.0 3.06e-01 100.0% 63.3%
7jl1B01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.50 40.0 3.26e-01 100.0% 70.2%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 40.0 2.51e-01 90.3% 30.6%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 38.0 3.57e-01 83.9% 70.9%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.50 37.0 3.61e-01 83.9% 72.6%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.50 36.0 3.77e-01 77.4% 96.3%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3452325 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.69 60.0 4.24e-01 100.0% 51.7%
138927 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.65 57.0 3.62e-01 100.0% 39.9%
4076563 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.65 56.0 3.58e-01 100.0% 38.4%
3788029 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.64 45.0 3.00e-01 74.2% 19.6%
3684619 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.64 56.0 3.48e-01 100.0% 55.3%
4235295 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.64 55.0 3.54e-01 100.0% 37.5%
3638485 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.64 54.0 3.55e-01 100.0% 49.5%
4024247 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.64 55.0 3.44e-01 100.0% 52.3%
3508437 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.64 56.0 3.48e-01 100.0% 43.4%
3900017 4.1.1.284 ↗ beta barrels › SH3 › SH3 › SH3 › SBNO 0.63 49.0 4.00e-01 85.5% 47.5%
3750815 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.63 55.0 3.40e-01 100.0% 40.5%
3628877 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.63 55.0 3.44e-01 100.0% 38.9%
3608005 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.63 54.0 3.46e-01 100.0% 40.3%
3366188 219.1.1.112 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.63 54.0 3.51e-01 100.0% 39.3%
3470550 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.63 55.0 3.54e-01 100.0% 38.4%
3593723 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.63 54.0 3.35e-01 100.0% 40.7%
3676439 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.63 54.0 3.38e-01 100.0% 33.1%
3568385 219.1.1.112 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.63 54.0 3.46e-01 100.0% 43.8%
3807424 219.1.1.112 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.63 53.0 3.43e-01 100.0% 42.8%
3460558 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.63 53.0 3.50e-01 100.0% 40.7%
3236014 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.63 54.0 3.46e-01 100.0% 42.5%
3362301 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.62 53.0 3.41e-01 100.0% 43.2%
3388829 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.62 53.0 3.25e-01 100.0% 35.2%
3679910 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.62 53.0 3.75e-01 100.0% 67.1%
4969674 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 44.0 2.76e-01 75.8% 17.2%
3809737 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.62 53.0 3.32e-01 100.0% 39.2%
3361220 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 52.0 3.27e-01 100.0% 37.3%
3502530 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 52.0 3.36e-01 100.0% 42.5%
3842107 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 52.0 3.34e-01 100.0% 41.9%
3701268 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 52.0 3.27e-01 100.0% 40.8%
3704833 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 52.0 3.35e-01 100.0% 36.8%
4278911 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.60 37.0 3.95e-01 72.6% 74.0%
5048065 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 48.0 4.24e-01 95.2% 60.0%
3216450 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.59 44.0 3.43e-01 83.9% 50.0%
3413860 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 50.0 3.15e-01 100.0% 42.9%
4525683 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.59 46.0 3.77e-01 98.4% 45.8%
3212890 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.57 43.0 2.96e-01 85.5% 24.4%
4040298 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 40.0 3.69e-01 74.2% 86.3%
3259097 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.57 43.0 3.48e-01 83.9% 60.8%
3927363 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.59e-01 80.6% 98.0%
3928297 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 47.0 3.45e-01 100.0% 74.4%
3222051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 46.0 4.58e-01 96.8% 93.8%
3211870 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.60e-01 87.1% 84.5%
3821919 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.55 42.0 4.33e-01 85.5% 90.0%
3597636 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.54 41.0 2.86e-01 83.9% 23.7%
4009281 219.1.1.65 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.54 45.0 3.90e-01 100.0% 60.0%
1114686 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.54 38.0 3.97e-01 75.8% 87.5%
4940673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 4.37e-01 91.9% 98.3%
2575643 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.53 39.0 3.81e-01 82.3% 71.0%
5643 809.2.1.1 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.53 36.0 3.53e-01 71.0% 85.9%
3931418 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 40.0 4.05e-01 80.6% 95.0%
5036621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 4.25e-01 85.5% 98.2%
3881123 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 43.0 3.95e-01 96.8% 68.2%
3704678 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.52 42.0 3.30e-01 100.0% 69.7%
4605602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.86e-01 83.9% 86.2%
3296644 5.1.4.266 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IFT122_1st 0.50 41.0 2.66e-01 95.2% 91.9%