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MG962366.1__AVO25138.1__SEA_FINCH_219__00219

Bact-Vir

MG962366.1__AVO25138.1__SEA_FINCH_219__00219

Identity

Accession:
MG962366 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-36_103-108_228-282
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qv6A01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.55 42.0 3.93e-01 85.3% 86.7%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.55 36.0 3.67e-01 100.0% 68.1%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3331686 304.109.1.4 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e 0.62 38.0 3.95e-01 100.0% 64.4%
3702503 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.59 38.0 3.98e-01 100.0% 70.0%
4629319 304.55.1.13 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Relaxase 0.58 40.0 3.68e-01 100.0% 55.8%
4025523 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 36.0 3.25e-01 75.8% 79.3%
D2 high residues 39-96
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 4.20e-01 86.2% 65.1%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.60 41.0 3.40e-01 98.3% 38.0%
5ifpA03 2.60.390.10 Mainly Beta › Sandwich › beta-galactosidase, domain 3 › Beta-galactosidase, domain 3 0.59 39.0 3.47e-01 93.1% 43.8%
3dpuA03 1.10.10.2200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 45.0 4.18e-01 89.7% 72.0%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 3.92e-01 89.7% 63.0%
1ka8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 3.74e-01 87.9% 73.0%
2v4jB01 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 48.0 3.75e-01 100.0% 56.8%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.56 42.0 3.90e-01 98.3% 63.6%
4v19K02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.55 43.0 4.07e-01 89.7% 74.7%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.74e-01 79.3% 67.1%
2o0yB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 4.00e-01 87.9% 73.8%
2cqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.56e-01 89.7% 49.5%
1z0mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 3.31e-01 100.0% 48.3%
4p9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.73e-01 87.9% 68.7%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 3.93e-01 96.6% 100.0%
5a48B00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.53 40.0 3.56e-01 89.7% 57.3%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.53 43.0 3.60e-01 94.8% 100.0%
2e9yB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.53 46.0 2.92e-01 100.0% 30.1%
5a72A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 37.0 2.83e-01 98.3% 28.7%
2y8yA01 3.30.70.1200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 0.53 45.0 4.01e-01 100.0% 73.3%
2gjxA01 3.30.379.10 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like 0.52 44.0 3.52e-01 100.0% 91.4%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.64e-01 89.7% 75.0%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.52 40.0 3.45e-01 87.9% 98.0%
1nowA01 3.30.379.10 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like 0.52 44.0 3.48e-01 100.0% 90.7%
3b73B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.56e-01 89.7% 59.6%
4d7kA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.32e-01 89.7% 51.0%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.44e-01 89.7% 54.5%
2amyA02 3.30.1240.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain 0.51 42.0 3.51e-01 93.1% 62.7%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.55e-01 98.3% 63.4%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 3.63e-01 89.7% 71.1%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 38.0 3.54e-01 89.7% 63.7%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4984969 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 54.0 3.55e-01 91.4% 23.1%
5059917 101.1.2.279 alpha arrays › HTH › HTH › winged helix domain › AbiEi_4 0.64 49.0 4.72e-01 89.7% 73.8%
5077789 101.1.2.948 alpha arrays › HTH › HTH › winged helix domain › PF27297 0.62 49.0 3.97e-01 87.9% 47.8%
3222445 148.1.3.41 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM5_C 0.60 47.0 4.48e-01 87.9% 73.9%
3180516 222.1.1.27 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 0.60 51.0 3.78e-01 100.0% 66.7%
5050212 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 4.07e-01 89.7% 56.8%
3508489 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 46.0 4.15e-01 87.9% 61.2%
5081852 101.1.2.837 alpha arrays › HTH › HTH › winged helix domain › Lin1244_N 0.59 44.0 3.95e-01 89.7% 54.4%
3242401 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 4.06e-01 89.7% 56.8%
5044288 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 44.0 4.04e-01 84.5% 60.0%
4956461 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 45.0 4.05e-01 84.5% 66.3%
3595754 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.58 44.0 3.99e-01 84.5% 61.2%
5010525 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 4.00e-01 86.2% 60.8%
3584275 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 45.0 3.90e-01 89.7% 59.0%
3283039 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 3.51e-01 89.7% 40.7%
4676610 387.1.5.1 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Gamma-thionin 0.58 42.0 4.54e-01 96.6% 100.0%
3971509 101.1.2.851 alpha arrays › HTH › HTH › winged helix domain › PF27731 0.58 45.0 4.02e-01 89.7% 61.1%
4191645 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.58 46.0 3.83e-01 93.1% 48.2%
3367832 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 45.0 2.56e-01 89.7% 7.1%
3426986 101.1.2.503 alpha arrays › HTH › HTH › winged helix domain › PF25875 0.57 44.0 4.32e-01 87.9% 80.0%
4028119 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 44.0 4.20e-01 87.9% 78.6%
4981596 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 43.0 4.09e-01 84.5% 72.9%
3206013 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.57 41.0 3.11e-01 100.0% 32.1%
4973290 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 4.17e-01 89.7% 78.6%
4986171 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.56 44.0 3.88e-01 89.7% 78.9%
2491388 101.1.2.177 alpha arrays › HTH › HTH › winged helix domain › MARF1_LOTUS 0.56 41.0 3.93e-01 89.7% 67.1%
3593172 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 3.84e-01 87.9% 63.5%
5012246 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 3.96e-01 87.9% 71.4%
3647082 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 3.74e-01 89.7% 61.1%
3957963 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.54 43.0 3.71e-01 89.7% 68.4%
3186208 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 34.0 3.31e-01 82.8% 55.4%
4940863 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 3.80e-01 89.7% 62.7%
3420784 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 45.0 3.79e-01 98.3% 56.2%
3426804 101.1.2.69 alpha arrays › HTH › HTH › winged helix domain › La 0.53 40.0 3.66e-01 89.7% 58.8%
4010695 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 3.95e-01 89.7% 75.7%
4232456 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.53 45.0 3.78e-01 100.0% 72.4%
3942543 101.1.2.43 alpha arrays › HTH › HTH › winged helix domain › Pox_D5 0.52 39.0 3.40e-01 89.7% 65.5%
4621497 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.52 37.0 3.16e-01 96.6% 42.9%
3287501 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 45.0 4.01e-01 100.0% 84.7%
1569482 101.1.2.137 alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.52 38.0 3.65e-01 87.9% 70.1%
3793409 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 41.0 2.83e-01 98.3% 24.0%
3939439 101.1.2.69 alpha arrays › HTH › HTH › winged helix domain › La 0.51 39.0 3.44e-01 89.7% 52.0%
3822341 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.51 43.0 3.89e-01 100.0% 87.1%
3313157 101.1.2.524 alpha arrays › HTH › HTH › winged helix domain › DUF7625 0.51 38.0 3.65e-01 87.9% 77.3%
3698299 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 39.0 2.98e-01 89.7% 35.6%
4964920 101.1.2.944 alpha arrays › HTH › HTH › winged helix domain › PF26486 0.50 38.0 3.80e-01 89.7% 83.3%
D3 high residues 136-223
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hsbA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.57 40.0 3.63e-01 73.9% 97.6%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.57 33.0 3.08e-01 100.0% 46.8%
1siqA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 34.0 2.83e-01 100.0% 34.8%
2oo2A00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.54 32.0 3.44e-01 98.9% 67.1%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 35.0 3.33e-01 100.0% 56.9%
3t46A00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.53 32.0 3.47e-01 100.0% 70.7%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 32.0 3.55e-01 84.1% 76.8%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.53 34.0 4.02e-01 100.0% 98.3%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 35.0 3.16e-01 100.0% 50.8%
1o2dA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.52 41.0 3.37e-01 88.6% 82.1%
3cqxC00 1.20.58.890 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 38.0 3.94e-01 100.0% 84.0%
1rrmA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.51 40.0 3.20e-01 88.6% 84.5%
1hbgA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 38.0 3.31e-01 83.0% 53.7%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3624728 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.69 35.0 3.62e-01 100.0% 50.6%
5009867 601.7.1.2 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN 0.68 35.0 3.27e-01 100.0% 40.9%
5061323 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.63 36.0 4.09e-01 100.0% 75.4%
3615607 192.5.1.17 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › DUF202 0.63 34.0 3.18e-01 100.0% 42.7%
4981747 632.15.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.62 35.0 4.02e-01 100.0% 75.4%
5060017 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.61 34.0 3.94e-01 100.0% 75.4%
3220228 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.58 36.0 3.41e-01 100.0% 52.4%
3900923 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 33.0 3.23e-01 100.0% 52.0%
3846037 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.55 34.0 3.02e-01 100.0% 42.3%
3574755 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.53 33.0 3.12e-01 100.0% 50.0%
3714091 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.53 35.0 3.77e-01 100.0% 78.7%
3543620 604.1.1.95 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › KIAA1755_C 0.53 38.0 3.74e-01 100.0% 69.5%
5043560 7064.1.1.1 alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.53 42.0 3.68e-01 87.5% 91.9%
3749998 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.52 38.0 3.45e-01 100.0% 56.7%
3758972 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.52 34.0 3.15e-01 100.0% 52.7%
3224632 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.52 35.0 3.35e-01 100.0% 59.0%
3796046 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.52 38.0 3.47e-01 100.0% 59.1%
3992691 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.51 35.0 3.32e-01 100.0% 60.0%
3284685 1174.1.1.2 alpha complex topology › Potassium channel TMEM175 › Potassium channel TMEM175 › Potassium channel TMEM175 › LtrA 0.51 41.0 3.27e-01 92.0% 69.7%