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MG967618.1__AXY83304.1__vBBBak10_060__00058

Bact-Vir

MG967618.1__AXY83304.1__vBBBak10_060__00058

Identity

Accession:
MG967618 ↗
Kingdom:
phage

Quality

85.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-50
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c24A02 1.10.3640.10 Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal 0.86 58.0 4.48e-01 70.8% 36.0%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.81 70.0 6.60e-01 97.9% 100.0%
3dteA02 1.10.10.1030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain 0.80 62.0 6.57e-01 87.5% 100.0%
1owfA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.80 54.0 4.29e-01 70.8% 35.4%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 70.0 5.79e-01 100.0% 66.3%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 65.0 6.56e-01 91.7% 95.8%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 68.0 5.74e-01 97.9% 62.2%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 67.0 6.06e-01 97.9% 70.3%
2r0bA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.78 58.0 4.07e-01 81.2% 82.8%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 64.0 5.02e-01 100.0% 45.0%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.76 61.0 4.95e-01 97.9% 46.8%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.76 64.0 5.01e-01 100.0% 49.1%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.75 62.0 5.19e-01 97.9% 52.2%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 58.0 5.84e-01 97.9% 87.5%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.75 63.0 5.12e-01 100.0% 60.8%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 65.0 5.54e-01 100.0% 61.0%
1hsjB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 63.0 5.25e-01 97.9% 54.7%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 60.0 5.14e-01 95.8% 57.7%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 61.0 5.84e-01 100.0% 82.1%
3kxyT00 6.20.290.10 Special › Other non-globular › Dna Ligase; domain 1 › 0.72 48.0 4.38e-01 70.8% 50.8%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.72 58.0 5.19e-01 91.7% 69.6%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 58.0 5.33e-01 95.8% 71.2%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.71 57.0 5.23e-01 93.8% 79.1%
4izzB02 1.10.10.1680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain 0.70 58.0 5.22e-01 100.0% 67.6%
2qsbA00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.70 45.0 3.73e-01 79.2% 37.6%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 54.0 5.06e-01 93.8% 70.0%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 57.0 5.24e-01 100.0% 77.9%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 61.0 5.34e-01 100.0% 72.6%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 4.32e-01 95.8% 41.0%
4pxoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 50.0 3.64e-01 77.1% 28.2%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 4.59e-01 100.0% 70.3%
3szpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 4.42e-01 91.7% 48.3%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 45.0 4.32e-01 70.8% 67.2%
4r2fA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.66 46.0 3.03e-01 72.9% 75.9%
4l8jA04 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.66 45.0 4.18e-01 91.7% 57.6%
1f20A01 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.65 54.0 3.80e-01 95.8% 33.7%
2vk9A03 1.10.3730.30 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › 0.64 48.0 3.93e-01 85.4% 95.9%
4gbjC02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.64 55.0 4.06e-01 100.0% 83.7%
3s84A02 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.64 45.0 3.15e-01 75.0% 23.6%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 4.35e-01 97.9% 63.3%
2ouwB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.62 53.0 3.90e-01 100.0% 35.3%
3s63A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.61 49.0 4.24e-01 100.0% 64.8%
4ap9A02 1.10.150.210 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 0.60 43.0 4.05e-01 85.4% 61.7%
2ov8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 46.0 3.33e-01 95.8% 79.9%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.58 44.0 3.77e-01 83.3% 51.9%
3fymA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 44.0 3.86e-01 91.7% 92.7%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 48.0 3.89e-01 95.8% 83.0%
1fxzA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 43.0 3.05e-01 87.5% 67.1%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.54 42.0 3.78e-01 91.7% 62.5%
1m4rB00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.54 39.0 2.97e-01 85.4% 83.0%
2oocB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.53 42.0 3.34e-01 91.7% 87.6%
4tpsA00 3.30.310.250 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA 0.50 39.0 2.95e-01 95.8% 98.6%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3829115 101.1.1.270 alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 0.90 81.0 7.31e-01 100.0% 75.4%
3439843 101.1.1.270 alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 0.89 81.0 6.60e-01 100.0% 57.6%
3438399 101.35.1.6 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › A_thal_3526 0.89 80.0 6.84e-01 100.0% 64.0%
3312794 101.1.3.22 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › A_thal_3526 0.88 80.0 6.83e-01 100.0% 65.3%
3341091 101.35.1.6 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › A_thal_3526 0.88 79.0 7.12e-01 100.0% 75.4%
3340005 101.1.2.472 alpha arrays › HTH › HTH › winged helix domain › A_thal_3526 0.88 78.0 6.37e-01 100.0% 55.7%
3334461 101.1.1.270 alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 0.88 78.0 6.71e-01 100.0% 65.3%
3813940 101.35.1.6 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › A_thal_3526 0.88 79.0 7.08e-01 100.0% 76.9%
3293154 101.1.2.472 alpha arrays › HTH › HTH › winged helix domain › A_thal_3526 0.88 79.0 7.29e-01 100.0% 81.7%
3814458 101.1.2.472 alpha arrays › HTH › HTH › winged helix domain › A_thal_3526 0.87 77.0 6.48e-01 100.0% 61.3%
5013516 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.86 75.0 5.96e-01 97.9% 52.6%
4983508 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.85 73.0 6.46e-01 97.9% 67.1%
5042759 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.84 76.0 6.51e-01 100.0% 73.3%
4964972 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.84 74.0 6.74e-01 97.9% 84.1%
5004914 101.35.1.40 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › DUF1699 0.84 69.0 6.52e-01 91.7% 77.6%
5053497 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.84 73.0 6.82e-01 97.9% 90.0%
4983598 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.84 71.0 6.43e-01 95.8% 83.1%
5013347 101.1.2.946 alpha arrays › HTH › HTH › winged helix domain › PF26555 0.83 66.0 6.80e-01 87.5% 100.0%
3310491 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 67.0 6.21e-01 89.6% 80.0%
5070584 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.82 72.0 5.85e-01 100.0% 56.7%
4363995 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.82 71.0 5.09e-01 100.0% 35.7%
4984847 101.1.2.128 alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.81 72.0 6.50e-01 100.0% 76.9%
3740448 101.1.10.33 alpha arrays › HTH › HTH › Cyclin-like › Rrn7_cyclin_C 0.81 70.0 5.80e-01 97.9% 58.8%
4965236 101.1.2.952 alpha arrays › HTH › HTH › winged helix domain › PF29290 0.81 71.0 6.60e-01 100.0% 85.0%
5042980 101.35.1.41 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF26555 0.80 67.0 6.67e-01 95.8% 100.0%
4946699 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 70.0 5.69e-01 100.0% 61.8%
3934128 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 68.0 6.54e-01 100.0% 87.3%
4984715 7573.1.1.1 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.78 67.0 4.38e-01 100.0% 23.0%
4944767 101.1.2.883 alpha arrays › HTH › HTH › winged helix domain › Radical_SAM 0.78 67.0 5.84e-01 97.9% 62.7%
4971669 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 69.0 4.88e-01 100.0% 37.9%
3931388 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 67.0 6.46e-01 100.0% 94.5%
4582084 132.3.1.0 alpha bundles › ACP-like › Hypothetical protein YjbJ › Hypothetical protein YjbJ 0.77 60.0 5.53e-01 83.3% 71.7%
5004578 101.1.1.545 alpha arrays › HTH › HTH › Three-helical HTH › DUF1699 0.77 65.0 6.08e-01 97.9% 80.0%
5021717 101.1.1.562 alpha arrays › HTH › HTH › Three-helical HTH › PF28505 0.76 58.0 4.29e-01 85.4% 32.3%
4189523 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 58.0 5.94e-01 85.4% 97.8%
5001937 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 60.0 5.85e-01 93.8% 90.9%
3694221 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.75 63.0 5.95e-01 97.9% 86.7%
4586835 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.75 64.0 5.89e-01 100.0% 81.5%
2325850 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 63.0 6.21e-01 100.0% 94.1%
4974452 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.75 59.0 5.74e-01 95.8% 80.0%
5021144 101.1.1.545 alpha arrays › HTH › HTH › Three-helical HTH › DUF1699 0.75 56.0 5.47e-01 85.4% 76.4%
4929498 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.74 60.0 6.15e-01 97.9% 97.8%
3707222 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 62.0 6.01e-01 100.0% 92.7%
3283752 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.73 60.0 4.96e-01 100.0% 55.8%
3237714 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 57.0 5.85e-01 91.7% 100.0%
3693801 101.1.2.461 alpha arrays › HTH › HTH › winged helix domain › HTH_NPRL3 0.71 55.0 5.66e-01 93.8% 93.3%
166741 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.71 58.0 4.58e-01 95.8% 43.5%
4375034 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.71 60.0 5.77e-01 95.8% 89.1%
3485420 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.70 58.0 5.51e-01 97.9% 78.3%
3603105 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 56.0 4.94e-01 97.9% 58.7%
5052346 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 58.0 5.50e-01 97.9% 85.0%
3223878 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.70 57.0 4.22e-01 100.0% 35.9%
3466087 101.1.1.253 alpha arrays › HTH › HTH › Three-helical HTH › HTH_CLF_N 0.69 55.0 5.51e-01 97.9% 94.0%
5019288 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 55.0 5.34e-01 100.0% 83.6%
3587870 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.67 57.0 4.46e-01 100.0% 66.4%
3691750 376.1.1.8 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.67 45.0 3.18e-01 83.3% 22.8%
3295575 284.1.3.2 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.63 51.0 4.21e-01 100.0% 72.0%
10305 7516.1.1.25 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › TcdA_TcdB 0.62 48.0 2.84e-01 91.7% 28.0%
3709296 5050.1.1.15 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nodulin-like 0.61 48.0 3.08e-01 95.8% 51.6%
4458464 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.58 50.0 3.03e-01 100.0% 18.0%
4554416 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.58 42.0 3.45e-01 77.1% 67.8%
3272285 2003.1.4.9 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2_2 0.57 46.0 2.95e-01 100.0% 97.9%
3988890 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.55 40.0 4.14e-01 87.5% 93.3%
4012820 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.54 47.0 3.22e-01 100.0% 60.0%
3245973 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 41.0 2.44e-01 93.8% 30.4%