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MG976803.1__AVP40106.1__PSH2311_009__00009

Bact-Vir

MG976803.1__AVP40106.1__PSH2311_009__00009

Identity

Accession:
MG976803 ↗
Kingdom:
phage

Quality

67.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mtkvariviridae› Kuravirus› Escherichia_phage_myPSH2311

TaxID: 2108113

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-61
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cwvA04 2.60.40.1080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.82 70.0 5.78e-01 98.0% 53.8%
5mc9A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.78 50.0 3.35e-01 100.0% 18.1%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.78 51.0 3.55e-01 100.0% 22.8%
5ngjA01 2.60.40.1080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.76 64.0 5.47e-01 100.0% 58.3%
4aq1A03 2.60.40.3440 Mainly Beta › Sandwich › Immunoglobulin-like › 0.74 63.0 4.92e-01 100.0% 43.5%
1cqkA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 61.0 4.91e-01 98.0% 66.3%
2b5iC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 61.0 5.01e-01 100.0% 67.7%
5oj2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 61.0 4.95e-01 100.0% 68.0%
3lb6D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 60.0 4.98e-01 100.0% 70.7%
2w59B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 59.0 4.61e-01 100.0% 65.8%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.64 44.0 3.71e-01 100.0% 42.9%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 46.0 2.99e-01 100.0% 18.6%
5z9sA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 54.0 4.06e-01 100.0% 65.0%
5aq0B00 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.61 50.0 4.36e-01 100.0% 58.5%
2xetB00 2.60.40.2070 Mainly Beta › Sandwich › Immunoglobulin-like › PapC, C-terminal domain 0.60 49.0 4.26e-01 100.0% 58.0%
3d30A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.60 48.0 4.12e-01 100.0% 54.3%
3fgtA01 2.10.70.60 Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 0.57 50.0 4.86e-01 100.0% 92.7%
3cb6A02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.56 45.0 2.99e-01 100.0% 25.2%
2pvzB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 44.0 2.97e-01 94.0% 42.7%
1yueA03 3.30.2320.40 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › 0.54 48.0 3.58e-01 100.0% 59.5%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3577209 11.1.1.827 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_NUP210_5th 0.86 72.0 5.83e-01 100.0% 49.5%
3935228 11.1.1.590 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NUP210_Ig15 0.84 76.0 5.86e-01 100.0% 48.6%
3261040 11.1.1.827 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_NUP210_5th 0.84 71.0 5.98e-01 100.0% 56.5%
3575411 11.1.1.590 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NUP210_Ig15 0.83 74.0 5.86e-01 100.0% 52.0%
4067298 11.1.1.38 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_2 0.82 73.0 5.85e-01 100.0% 52.6%
4396532 11.1.1.328 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Invasin_D4 0.81 72.0 5.80e-01 100.0% 52.6%
3244191 11.1.1.590 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NUP210_Ig15 0.81 72.0 5.61e-01 100.0% 49.5%
3244196 11.1.1.38 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_2 0.81 68.0 5.89e-01 100.0% 60.0%
3302755 11.1.1.827 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_NUP210_5th 0.81 67.0 5.55e-01 100.0% 52.2%
3566233 11.1.1.827 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_NUP210_5th 0.81 68.0 5.76e-01 100.0% 56.5%
3261042 11.1.1.592 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NUP210_Ig3 0.80 66.0 5.47e-01 100.0% 52.2%
3302750 11.1.1.590 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NUP210_Ig15 0.78 68.0 5.29e-01 100.0% 48.2%
5060213 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.76 67.0 5.41e-01 100.0% 58.9%
2387783 11.1.1.38 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_2 0.76 64.0 5.22e-01 100.0% 50.5%
4821007 11.1.1.38 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_2 0.76 64.0 6.11e-01 100.0% 82.0%
3497293 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.75 64.0 5.04e-01 100.0% 61.8%
4955496 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.72 59.0 5.17e-01 100.0% 60.0%
3838878 11.1.1.148 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FixG_C 0.70 60.0 4.67e-01 100.0% 64.4%
3246454 11.1.1.876 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29962 0.70 60.0 4.97e-01 100.0% 56.8%
2769360 719.1.1.4 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › SAS-6_N 0.70 52.0 4.40e-01 98.0% 50.6%
3491692 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 60.0 5.57e-01 100.0% 93.8%
2559761 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 60.0 4.69e-01 100.0% 46.4%
5030339 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 59.0 4.80e-01 100.0% 53.7%
3863406 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.64 52.0 4.64e-01 100.0% 62.7%
4972329 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.64 50.0 3.72e-01 86.0% 60.0%
5002628 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 49.0 3.90e-01 100.0% 42.0%
4057609 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.64 56.0 4.72e-01 100.0% 58.8%
3933662 6094.1.1.0 ↗ a+b two layers › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase 0.62 56.0 4.99e-01 100.0% 98.6%
5019856 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.61 43.0 3.57e-01 100.0% 43.5%
4179795 11.1.4.25 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PapC_C 0.56 44.0 3.94e-01 100.0% 63.5%
3635749 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.54 47.0 3.26e-01 100.0% 74.5%
4994607 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.53 48.0 3.63e-01 100.0% 51.3%