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MG976803.1__AVP40123.1__PSH2311_026__00026

Bact-Vir

MG976803.1__AVP40123.1__PSH2311_026__00026

Identity

Accession:
MG976803 ↗
Kingdom:
phage

Quality

58.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mtkvariviridae› Kuravirus› Escherichia_phage_myPSH2311

TaxID: 2108113

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 98-176
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 47.0 5.46e-01 73.4% 89.3%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 50.0 5.19e-01 72.2% 85.3%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 5.05e-01 72.2% 76.2%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 47.0 5.20e-01 73.4% 90.2%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 51.0 5.19e-01 78.5% 88.2%
2nnnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 58.0 4.89e-01 96.2% 93.9%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.66 48.0 4.78e-01 77.2% 75.9%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 48.0 4.55e-01 77.2% 64.9%
2ig3A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 57.0 4.89e-01 100.0% 82.7%
3bbzA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.63 33.0 3.95e-01 96.2% 79.2%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 4.28e-01 82.3% 63.8%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.83e-01 89.9% 90.0%
4dveA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.59 50.0 3.91e-01 98.7% 98.4%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 50.0 4.25e-01 96.2% 91.9%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.59 45.0 3.48e-01 84.8% 87.6%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.58 48.0 4.14e-01 98.7% 56.5%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 4.17e-01 100.0% 90.8%
4m0mA03 1.20.1270.430 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.56 38.0 3.89e-01 100.0% 73.4%
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.55 34.0 3.85e-01 96.2% 85.7%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.55 33.0 3.88e-01 81.0% 87.3%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 45.0 3.89e-01 97.5% 90.0%
2jrtA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 4.37e-01 96.2% 94.2%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.54 36.0 3.62e-01 92.4% 65.9%
4l7nA01 1.20.142.10 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain 0.53 37.0 3.17e-01 74.7% 67.1%
2lwdA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.53 42.0 4.01e-01 87.3% 100.0%
5x56B00 1.20.58.810 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 0.52 39.0 3.66e-01 94.9% 61.9%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004314 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.77 53.0 5.48e-01 70.9% 80.0%
5003692 101.1.6.12 ↗ alpha arrays › HTH › HTH › TrpR › HTH_23 0.77 53.0 5.81e-01 70.9% 92.3%
5007028 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.77 49.0 5.70e-01 78.5% 92.7%
4958468 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.76 50.0 5.61e-01 74.7% 88.3%
5080109 101.1.2.139 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_23 0.76 52.0 5.36e-01 70.9% 80.0%
5008425 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.75 52.0 5.20e-01 70.9% 80.0%
4973199 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.74 50.0 5.70e-01 73.4% 91.7%
5018167 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.73 50.0 5.34e-01 70.9% 90.0%
4968313 101.1.6.12 ↗ alpha arrays › HTH › HTH › TrpR › HTH_23 0.73 50.0 5.00e-01 70.9% 78.8%
3978496 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.72 56.0 5.92e-01 83.5% 100.0%
3286659 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.72 50.0 5.33e-01 72.2% 97.1%
4336182 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 56.0 5.42e-01 84.8% 74.4%
2464007 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.72 55.0 5.90e-01 84.8% 98.5%
3603167 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.71 46.0 5.03e-01 73.4% 80.0%
4034495 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 53.0 4.77e-01 78.5% 79.0%
4031535 101.1.1.275 ↗ alpha arrays › HTH › HTH › Three-helical HTH › GerE 0.70 49.0 5.48e-01 81.0% 96.7%
5025805 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 45.0 5.20e-01 72.2% 94.5%
3959876 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.70 56.0 5.20e-01 87.3% 70.0%
5011873 4156.1.1.6 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc 0.70 60.0 4.70e-01 93.7% 76.4%
3976103 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.70 51.0 5.58e-01 75.9% 95.4%
3279339 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.70 57.0 4.35e-01 89.9% 38.4%
4303963 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.69 53.0 5.46e-01 84.8% 86.7%
3283374 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.69 55.0 5.25e-01 88.6% 74.7%
3955987 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.69 54.0 5.13e-01 84.8% 73.7%
4936653 4156.1.1.6 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc 0.69 59.0 4.86e-01 94.9% 87.6%
4034281 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 53.0 4.73e-01 82.3% 74.5%
4347676 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.68 48.0 4.62e-01 73.4% 86.7%
3959929 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.68 53.0 5.31e-01 87.3% 85.0%
4458444 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.68 52.0 4.93e-01 87.3% 69.5%
3972713 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.68 52.0 4.93e-01 86.1% 69.5%
4237551 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.68 53.0 5.02e-01 86.1% 71.6%
3759371 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 52.0 5.00e-01 82.3% 89.9%
3973360 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.67 50.0 5.30e-01 83.5% 88.6%
3163616 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.67 49.0 4.67e-01 88.6% 66.0%
3969666 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.67 47.0 4.54e-01 73.4% 78.9%
4214308 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.67 52.0 5.07e-01 82.3% 76.5%
2817645 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.67 47.0 4.72e-01 77.2% 72.5%
3979166 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.67 53.0 5.58e-01 97.5% 100.0%
3964397 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.67 48.0 4.47e-01 88.6% 59.0%
3916395 101.1.1.129 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.66 53.0 4.83e-01 86.1% 76.2%
3163613 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 51.0 5.34e-01 81.0% 91.4%
3971395 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.66 48.0 4.93e-01 88.6% 82.7%
3971149 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.66 49.0 4.97e-01 88.6% 81.2%
3283074 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.66 53.0 5.23e-01 87.3% 91.8%
4146353 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.66 50.0 5.06e-01 84.8% 82.5%
4148347 101.1.1.26 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.65 49.0 4.53e-01 81.0% 64.4%
3971665 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 51.0 5.20e-01 94.9% 92.0%
3282225 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.63 49.0 4.96e-01 84.8% 85.0%
4175748 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.63 53.0 5.31e-01 97.5% 96.2%
3284011 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.63 49.0 5.13e-01 84.8% 97.1%
3964882 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 46.0 3.89e-01 78.5% 87.4%
4456068 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.62 48.0 4.53e-01 91.1% 68.0%
4603338 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.62 47.0 4.89e-01 84.8% 92.9%
3951829 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.61 49.0 4.86e-01 88.6% 82.4%
3973850 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.59 52.0 4.89e-01 97.5% 89.5%
4466704 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.59 49.0 4.61e-01 98.7% 75.0%
3286796 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.59 50.0 4.76e-01 98.7% 81.1%
3286340 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.58 50.0 4.74e-01 97.5% 89.2%
5080445 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.56 48.0 3.48e-01 98.7% 52.1%
4932587 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.55 41.0 3.12e-01 81.0% 68.2%
4414382 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.54 46.0 4.49e-01 96.2% 87.1%
4927152 4049.1.1.0 ↗ alpha superhelices › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like 0.52 33.0 3.79e-01 92.4% 85.0%