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MG983743.2__AVO23092.1__RIVERRIDER_4__00004

Bact-Vir

MG983743.2__AVO23092.1__RIVERRIDER_4__00004

Identity

Accession:
MG983743 ↗
Kingdom:
phage

Quality

84.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Riverridervirus› Xanthomonas_phage_RiverRider

TaxID: 2108116

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-69
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 57.0 6.01e-01 91.2% 100.0%
3pasA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.67 57.0 4.23e-01 100.0% 58.4%
3mnlB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.67 57.0 4.26e-01 98.5% 59.3%
3d5lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 43.0 4.86e-01 82.4% 100.0%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 5.17e-01 97.1% 86.7%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 55.0 4.86e-01 97.1% 68.0%
2gfnA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.65 55.0 4.04e-01 98.5% 55.7%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 4.98e-01 92.6% 75.3%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 50.0 4.78e-01 91.2% 79.3%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.62 48.0 4.30e-01 88.2% 59.8%
1uzcA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.62 48.0 4.81e-01 85.3% 85.5%
3bf7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 45.0 3.10e-01 88.2% 21.2%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 45.0 4.79e-01 80.9% 100.0%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 4.82e-01 95.6% 77.4%
5fglA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 48.0 3.50e-01 89.7% 56.0%
1l9lA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.59 45.0 4.40e-01 82.4% 86.5%
2ixnA02 1.20.120.1150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Phosphotyrosyl phosphate activator, C-terminal lid domain 0.59 43.0 3.77e-01 79.4% 76.6%
4wzsB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.59 46.0 3.89e-01 100.0% 51.3%
1q8cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.59 48.0 3.93e-01 92.6% 68.9%
1bqbA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.58 45.0 3.52e-01 98.5% 38.9%
3t5vA00 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 45.0 2.98e-01 88.2% 21.7%
2d2mD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 49.0 3.89e-01 97.1% 57.9%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.57 42.0 4.48e-01 85.3% 93.0%
1su0B00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.56 46.0 3.77e-01 94.1% 57.4%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 46.0 4.44e-01 98.5% 80.2%
1j09A05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 42.0 3.82e-01 86.8% 76.5%
4v1sA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.55 46.0 3.00e-01 100.0% 43.2%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 40.0 4.16e-01 95.6% 88.5%
3qqaA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 46.0 3.68e-01 100.0% 64.5%
1irxA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 40.0 3.75e-01 88.2% 80.6%
4mndA02 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.52 46.0 3.37e-01 100.0% 66.5%
3vhlA02 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.52 45.0 3.81e-01 100.0% 82.5%
1wn0A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.52 42.0 3.39e-01 100.0% 45.8%
3e0fA02 1.10.150.650 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.52 40.0 3.96e-01 88.2% 79.7%
3ma5A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 38.0 3.55e-01 95.6% 62.2%
2jbwA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.51 44.0 3.91e-01 98.5% 84.5%
1puoB00 1.20.920.50 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.51 39.0 3.15e-01 85.3% 48.6%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.50 38.0 3.57e-01 91.2% 63.3%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4963316 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.77 68.0 4.49e-01 97.1% 25.8%
5038818 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.77 68.0 4.42e-01 97.1% 23.6%
3427768 101.1.2.160 ↗ alpha arrays › HTH › HTH › winged helix domain › BLACT_WH 0.75 67.0 4.28e-01 100.0% 22.8%
3641983 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.74 66.0 4.27e-01 100.0% 24.3%
4025625 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 62.0 6.19e-01 97.1% 91.3%
3573652 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 50.0 5.53e-01 86.8% 100.0%
4988076 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 58.0 5.81e-01 97.1% 92.6%
4970916 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 59.0 5.15e-01 95.6% 63.8%
135163 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.69 56.0 4.51e-01 89.7% 47.4%
3737539 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.69 59.0 5.59e-01 98.5% 81.2%
3334149 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 50.0 5.35e-01 77.9% 96.4%
3281517 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.68 60.0 4.44e-01 100.0% 61.7%
5033536 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 55.0 4.68e-01 89.7% 56.4%
3264673 101.1.2.498 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25870 0.67 52.0 4.28e-01 86.8% 77.7%
3992048 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 47.0 5.00e-01 86.8% 94.5%
4953832 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.66 47.0 5.03e-01 82.4% 92.7%
3237291 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 56.0 5.08e-01 92.6% 78.9%
3286496 191.1.1.63 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_N 0.66 56.0 4.14e-01 100.0% 58.5%
4997248 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 58.0 5.10e-01 98.5% 69.0%
4009179 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 53.0 4.89e-01 91.2% 72.2%
4953119 101.1.2.805 ↗ alpha arrays › HTH › HTH › winged helix domain › PF26350 0.65 51.0 3.84e-01 88.2% 38.9%
5079733 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 45.0 4.45e-01 82.4% 66.7%
1165372 101.1.2.9 ↗ alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV 0.65 56.0 4.54e-01 100.0% 65.9%
4939871 101.1.2.896 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.64 54.0 4.71e-01 95.6% 61.0%
3366917 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.64 48.0 5.10e-01 82.4% 100.0%
3814136 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 48.0 5.09e-01 82.4% 100.0%
4618903 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.64 52.0 5.00e-01 92.6% 91.3%
4942972 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 52.0 5.01e-01 95.6% 86.3%
3236431 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 46.0 4.66e-01 85.3% 81.4%
3601831 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 48.0 4.74e-01 95.6% 98.7%
5064866 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 4.17e-01 95.6% 60.0%
3596791 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.58 46.0 3.38e-01 91.2% 51.4%
3480227 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.58 48.0 3.59e-01 100.0% 46.8%
3709674 101.1.1.50 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Nop16 0.57 47.0 4.63e-01 95.6% 98.7%
4456963 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.57 42.0 3.19e-01 80.9% 34.6%
3230061 2004.1.1.200 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_25 0.57 45.0 3.03e-01 89.7% 43.0%
3597830 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.56 44.0 3.68e-01 100.0% 48.3%
3926773 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.56 46.0 4.27e-01 100.0% 73.7%
4968790 7575.1.1.0 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like 0.54 45.0 2.92e-01 95.6% 51.5%
4947212 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.54 37.0 3.30e-01 86.8% 48.0%
4030179 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.54 47.0 4.09e-01 98.5% 82.9%
4471471 7579.1.1.89 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE 0.53 44.0 2.63e-01 92.6% 29.8%
4260422 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.52 38.0 2.90e-01 85.3% 73.9%
4972840 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.50 38.0 2.85e-01 88.2% 28.8%
3769667 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.50 43.0 3.73e-01 95.6% 95.2%