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MH000606.1__AVO23492.1__SEA_FASCINUS_85__00085
Bact-VirMH000606.1__AVO23492.1__SEA_FASCINUS_85__00085
Identity
- Accession:
- MH000606 ↗
- Kingdom:
- phage
Quality
67.2
mean pLDDT
Taxonomy
TaxID: 2108118
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 45-129
Domain cluster:
rep: NC_060137.1__YP_010246791.1__L3Y25_gp103__00132__D14-76
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.64 | 46.0 | 4.24e-01 | 100.0% | 58.7% |
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 39.0 | 4.27e-01 | 98.8% | 77.9% |
| 3c6kA01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.60 | 41.0 | 3.99e-01 | 88.2% | 62.8% |
| 1jx4A04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.60 | 41.0 | 3.96e-01 | 100.0% | 62.2% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 38.0 | 4.04e-01 | 100.0% | 73.7% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 38.0 | 4.00e-01 | 100.0% | 72.4% |
| 3waiA02 | 2.60.40.3390 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 38.0 | 3.71e-01 | 100.0% | 60.2% |
| 3buuB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.57 | 52.0 | 3.84e-01 | 100.0% | 83.6% |
| 2mouA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 47.0 | 3.61e-01 | 95.3% | 56.8% |
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.57 | 42.0 | 3.83e-01 | 100.0% | 57.1% |
| 2iciA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.56 | 44.0 | 3.76e-01 | 87.1% | 86.6% |
| 1em2A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 46.0 | 3.54e-01 | 92.9% | 57.0% |
| 4clcA00 | 3.30.450.150 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain | 0.56 | 45.0 | 3.66e-01 | 89.4% | 97.0% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.55 | 42.0 | 3.49e-01 | 85.9% | 96.4% |
| 2pstX00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.54 | 34.0 | 3.92e-01 | 90.6% | 88.5% |
| 3q34A00 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.54 | 46.0 | 3.77e-01 | 100.0% | 96.0% |
| 4hvtA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 43.0 | 2.96e-01 | 89.4% | 69.8% |
| 3mwxA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 36.0 | 2.52e-01 | 71.8% | 87.6% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.53 | 40.0 | 3.64e-01 | 83.5% | 81.7% |
| 1fo0B00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 3.57e-01 | 100.0% | 59.8% |
| 1bp1A01 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.52 | 36.0 | 2.96e-01 | 74.1% | 96.7% |
| 2v3sA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 44.0 | 4.33e-01 | 100.0% | 100.0% |
| 1ycoA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.52 | 43.0 | 3.12e-01 | 96.5% | 44.2% |
| 1et9A01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 44.0 | 4.10e-01 | 100.0% | 89.1% |
| 5ja1B00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.50 | 33.0 | 3.60e-01 | 88.2% | 84.8% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.50 | 37.0 | 3.48e-01 | 80.0% | 90.1% |
| 1am5A02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.50 | 38.0 | 3.17e-01 | 100.0% | 45.4% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3823427 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.67 | 44.0 | 3.95e-01 | 85.9% | 46.4% |
| 4025692 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.64 | 44.0 | 2.95e-01 | 71.8% | 27.4% |
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.64 | 40.0 | 4.59e-01 | 100.0% | 96.4% |
| 3742497 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.62 | 46.0 | 4.23e-01 | 90.6% | 58.3% |
| 3917143 | 304.100.1.0 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like | 0.62 | 39.0 | 4.54e-01 | 98.8% | 90.0% |
| 4937773 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.62 | 39.0 | 4.46e-01 | 100.0% | 94.8% |
| 3287357 | 3115.3.1.0 ↗ | a+b two layers › GP2-like › P56 › P56 | 0.62 | 41.0 | 4.68e-01 | 100.0% | 98.3% |
| 5067865 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.61 | 39.0 | 4.21e-01 | 100.0% | 78.6% |
| 2028252 | 3986.2.1.1 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd › Dmd | 0.61 | 41.0 | 4.59e-01 | 82.4% | 92.2% |
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.60 | 39.0 | 4.25e-01 | 100.0% | 85.9% |
| 4990637 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.60 | 39.0 | 3.99e-01 | 100.0% | 67.5% |
| 3787214 | 312.1.1.6 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 | 0.58 | 50.0 | 3.73e-01 | 100.0% | 35.7% |
| 3781849 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.58 | 37.0 | 3.72e-01 | 87.1% | 61.1% |
| 4031235 | 3986.2.1.2 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd › DUF2922 | 0.58 | 41.0 | 4.46e-01 | 100.0% | 90.0% |
| 5078870 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.58 | 39.0 | 3.36e-01 | 70.6% | 92.1% |
| 163858 | 221.1.1.17 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C | 0.57 | 45.0 | 3.95e-01 | 87.1% | 93.2% |
| 3955717 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.57 | 42.0 | 3.74e-01 | 100.0% | 53.6% |
| 3962490 | 3513.1.1.4 ↗ | a+b two layers › Putative lipoprotein LppA › Putative lipoprotein LppA › Putative lipoprotein LppA › PF27220 | 0.57 | 49.0 | 4.24e-01 | 96.5% | 61.5% |
| 5057619 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.56 | 36.0 | 2.68e-01 | 100.0% | 23.1% |
| 3388281 | 3019.1.1.0 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain | 0.56 | 45.0 | 3.71e-01 | 100.0% | 45.9% |
| 4438074 | 223.1.1.5 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HrcA | 0.56 | 46.0 | 3.88e-01 | 90.6% | 100.0% |
| 5006269 | 10.48.1.0 ↗ | beta sandwiches › jelly-roll › Camelysin metallo-endopeptidase-like › Camelysin metallo-endopeptidase-like | 0.56 | 45.0 | 3.36e-01 | 88.2% | 80.9% |
| 3279316 | 244.2.1.5 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Reductase_C | 0.55 | 35.0 | 3.66e-01 | 81.2% | 70.7% |
| 3819113 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.55 | 48.0 | 3.35e-01 | 100.0% | 96.9% |
| 7605 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.54 | 38.0 | 2.88e-01 | 74.1% | 96.3% |
| 3957126 | 244.2.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain | 0.53 | 34.0 | 3.43e-01 | 82.4% | 62.4% |
| 3972526 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 40.0 | 4.42e-01 | 97.6% | 97.1% |
| 1322695 | 12.3.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim | 0.53 | 36.0 | 2.51e-01 | 71.8% | 87.9% |
| 5011661 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.53 | 47.0 | 3.67e-01 | 100.0% | 83.7% |
| 5053281 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 35.0 | 3.19e-01 | 71.8% | 78.4% |
| 3497652 | 864.1.1.0 ↗ | a+b two layers › DLC › DLC › DLC | 0.52 | 42.0 | 4.26e-01 | 98.8% | 92.9% |
| 3957598 | 2004.1.2.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP | 0.51 | 38.0 | 2.76e-01 | 100.0% | 28.7% |
| 5005180 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.50 | 46.0 | 4.03e-01 | 100.0% | 97.6% |
| 3487132 | 244.2.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain | 0.50 | 35.0 | 3.37e-01 | 81.2% | 62.0% |
| 3590658 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 38.0 | 4.06e-01 | 100.0% | 98.6% |