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MH001447.1__AVO21442.1__PBI_NILO_44__00044
Bact-VirMH001447.1__AVO21442.1__PBI_NILO_44__00044
Identity
- Accession:
- MH001447 ↗
- Kingdom:
- phage
Quality
85.2
mean pLDDT
Taxonomy
TaxID: 2108129
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-106
Domain cluster:
rep: KM923971.1__AJK27399.1__PBI_KRATIO_70__00069__D13-98
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cmjA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.71 | 53.0 | 3.47e-01 | 78.5% | 62.4% |
| 4cpgA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.69 | 37.0 | 4.20e-01 | 95.7% | 69.6% |
| 4g12A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.66 | 58.0 | 5.01e-01 | 100.0% | 78.5% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.65 | 40.0 | 4.58e-01 | 91.4% | 85.1% |
| 3mvpA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.65 | 58.0 | 4.97e-01 | 100.0% | 73.8% |
| 1gcbA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.64 | 57.0 | 3.77e-01 | 100.0% | 29.0% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.64 | 44.0 | 4.72e-01 | 82.8% | 83.5% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.63 | 46.0 | 4.84e-01 | 100.0% | 85.9% |
| 5hyhA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.63 | 55.0 | 3.95e-01 | 100.0% | 74.9% |
| 2vpzC00 | 1.20.1630.10 | Mainly Alpha › Up-down Bundle › Formate dehydrogenase/DMSO reductase fold › Formate dehydrogenase/DMSO reductase domain | 0.61 | 53.0 | 4.01e-01 | 100.0% | 91.6% |
| 4mo7A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 54.0 | 4.72e-01 | 98.9% | 76.8% |
| 3cjdA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 52.0 | 4.23e-01 | 98.9% | 61.0% |
| 1lfkA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.59 | 52.0 | 3.41e-01 | 94.6% | 53.1% |
| 3gi8C00 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.58 | 49.0 | 3.26e-01 | 97.8% | 61.1% |
| 5z7qA00 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.57 | 52.0 | 4.20e-01 | 98.9% | 66.5% |
| 6xkyA01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.57 | 52.0 | 4.08e-01 | 98.9% | 61.0% |
| 1io1A01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.57 | 51.0 | 4.19e-01 | 98.9% | 65.7% |
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.56 | 39.0 | 3.84e-01 | 73.1% | 70.6% |
| 3kyiA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.54 | 48.0 | 4.37e-01 | 100.0% | 77.3% |
| 4o6yB00 | 1.20.120.1770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.54 | 49.0 | 3.73e-01 | 98.9% | 73.0% |
| 7zmgL01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 39.0 | 4.16e-01 | 88.2% | 87.5% |
| 1k92A02 | 3.90.1260.10 | Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 | 0.54 | 47.0 | 3.63e-01 | 98.9% | 97.7% |
| 6yz2A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.54 | 48.0 | 4.43e-01 | 98.9% | 76.7% |
| 2wyhB04 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.54 | 41.0 | 4.02e-01 | 97.8% | 75.2% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.53 | 47.0 | 4.40e-01 | 98.9% | 82.9% |
| 2uuiA00 | 1.20.120.550 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain | 0.53 | 42.0 | 3.64e-01 | 89.2% | 69.7% |
| 3fajA00 | 1.20.120.950 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 | 0.53 | 47.0 | 4.57e-01 | 97.8% | 98.0% |
| 1orsC00 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.52 | 46.0 | 4.10e-01 | 96.8% | 82.6% |
| 2pvqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 46.0 | 4.41e-01 | 100.0% | 83.0% |
| 5dkoA02 | 1.10.3900.10 | Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like | 0.51 | 42.0 | 3.49e-01 | 90.3% | 97.0% |
| 2efkA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.51 | 44.0 | 3.20e-01 | 95.7% | 80.2% |
| 1st6A03 | 1.20.120.810 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle | 0.51 | 44.0 | 3.39e-01 | 98.9% | 47.2% |
| 2j9wB00 | 1.20.120.1130 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain | 0.51 | 44.0 | 4.36e-01 | 94.6% | 96.0% |
| 7eu3E01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 39.0 | 4.06e-01 | 83.9% | 88.5% |
| 2ksfA00 | 1.20.120.620 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Backbone structure of the membrane domain of e. Coli histidine kinase receptor kdpd, | 0.51 | 44.0 | 4.27e-01 | 97.8% | 86.9% |
| 1wn0A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.50 | 42.0 | 3.80e-01 | 98.9% | 66.4% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5046564 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.66 | 48.0 | 3.76e-01 | 75.3% | 63.6% |
| 377521 | 603.1.1.7 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › KinB_sensor | 0.64 | 52.0 | 4.62e-01 | 86.0% | 76.6% |
| 4937760 | 3930.2.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in endoribonuclease Dicer › Helical bundle in endoribonuclease Dicer | 0.63 | 37.0 | 2.94e-01 | 94.6% | 29.7% |
| 1759954 | 3352.1.1.2 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT_2 | 0.63 | 56.0 | 3.64e-01 | 98.9% | 39.1% |
| 4569984 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.62 | 45.0 | 2.89e-01 | 95.7% | 16.1% |
| 3218745 | 5001.1.1.84 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srz | 0.62 | 47.0 | 3.39e-01 | 79.6% | 38.1% |
| 5026526 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.62 | 42.0 | 4.18e-01 | 95.7% | 66.0% |
| 3974456 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.60 | 41.0 | 4.47e-01 | 92.5% | 86.7% |
| 3223294 | 109.4.1.140 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NatB_MDM20 | 0.60 | 49.0 | 4.03e-01 | 88.2% | 92.7% |
| 4025804 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 53.0 | 4.40e-01 | 100.0% | 56.9% |
| 3702788 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 48.0 | 4.02e-01 | 97.8% | 52.3% |
| 5035400 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.59 | 53.0 | 4.87e-01 | 100.0% | 85.0% |
| 3966605 | 601.4.1.84 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › KinB_sensor | 0.58 | 53.0 | 4.84e-01 | 98.9% | 85.8% |
| 5078180 | 2498.1.1.6 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 | 0.58 | 52.0 | 3.25e-01 | 96.8% | 63.5% |
| 4083980 | 5059.1.1.2 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Multi_Drug_Res | 0.57 | 52.0 | 4.98e-01 | 100.0% | 99.0% |
| 4994184 | 2486.1.1.24 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › NfeD_membrane | 0.57 | 51.0 | 3.53e-01 | 100.0% | 29.1% |
| 3744 | 601.13.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › Flagellar export chaperone FliS › Flagellar export chaperone FliS › FliS | 0.56 | 50.0 | 4.48e-01 | 95.7% | 75.4% |
| 3564243 | 601.1.1.68 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › RHG29_45_N | 0.56 | 52.0 | 4.76e-01 | 100.0% | 89.2% |
| 3838593 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.55 | 47.0 | 4.29e-01 | 100.0% | 69.6% |
| 3505680 | 192.29.1.31 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › CRIC_ras_sig | 0.55 | 50.0 | 4.48e-01 | 97.8% | 92.8% |
| 3589765 | 601.41.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › C-terminal domain in uncharacterized DUF3829-like protein › C-terminal domain in uncharacterized DUF3829-like protein | 0.55 | 47.0 | 4.83e-01 | 92.5% | 98.9% |
| 3998525 | 196.1.1.1 ↗ | alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS | 0.54 | 47.0 | 3.80e-01 | 94.6% | 52.2% |
| 4945496 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.54 | 36.0 | 3.95e-01 | 100.0% | 84.0% |
| 5049088 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.54 | 49.0 | 4.62e-01 | 97.8% | 90.0% |
| 4416494 | 3352.1.1.3 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT | 0.54 | 42.0 | 2.83e-01 | 88.2% | 50.9% |
| 4874447 | 5059.1.1.2 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Multi_Drug_Res | 0.53 | 48.0 | 4.70e-01 | 100.0% | 99.0% |
| 3980912 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.53 | 46.0 | 4.34e-01 | 100.0% | 91.3% |
| 2711690 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.53 | 48.0 | 3.40e-01 | 98.9% | 36.9% |
| 184933 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.53 | 48.0 | 4.57e-01 | 100.0% | 96.4% |
| 4580475 | 3684.1.1.28 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PF26154 | 0.52 | 47.0 | 4.28e-01 | 98.9% | 84.0% |
| 3194004 | 1075.4.1.9 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_tran+ABC_membrane | 0.52 | 45.0 | 2.61e-01 | 100.0% | 73.0% |
| 3814731 | 109.4.1.575 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF577 | 0.52 | 47.0 | 3.25e-01 | 100.0% | 29.7% |
| 4945373 | 5001.1.1.79 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › YhhN | 0.52 | 46.0 | 3.51e-01 | 98.9% | 79.1% |
| 3233284 | 5001.1.1.84 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srz | 0.52 | 46.0 | 3.25e-01 | 100.0% | 72.5% |
| 4008098 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.52 | 46.0 | 4.27e-01 | 100.0% | 79.2% |
| 4680153 | 7015.1.1.1 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC | 0.52 | 41.0 | 3.60e-01 | 84.9% | 82.1% |
| 3340986 | 601.51.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin | 0.52 | 46.0 | 3.61e-01 | 98.9% | 74.0% |
| 4857065 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.51 | 46.0 | 4.32e-01 | 100.0% | 84.8% |
| 3663121 | 5069.1.1.62 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Chloroplast_duf | 0.51 | 46.0 | 4.44e-01 | 100.0% | 100.0% |
| 3732353 | 109.4.1.128 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G_like_2 | 0.51 | 43.0 | 3.08e-01 | 92.5% | 35.6% |
| 3945292 | 304.48.1.47 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › MASE1 | 0.51 | 41.0 | 2.97e-01 | 89.2% | 34.7% |
| 3707262 | 109.4.1.759 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Dymeclin | 0.51 | 37.0 | 2.93e-01 | 98.9% | 34.8% |
| 4162664 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.51 | 46.0 | 4.27e-01 | 100.0% | 80.9% |
| 3967073 | 601.3.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain | 0.51 | 45.0 | 4.15e-01 | 100.0% | 85.8% |
| 3690868 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 40.0 | 2.63e-01 | 88.2% | 19.0% |