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MH015258.1__AWY09458.1__vB_RpoS-V16_22__00022

Bact-Vir

MH015258.1__AWY09458.1__vB_RpoS-V16_22__00022

Identity

Accession:
MH015258 ↗
Kingdom:
phage

Quality

89.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casjensviridae› Ruegeria_phage_vB_RpoS-V16

TaxID: 2218618

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-71
PDB
Domain cluster: rep: OQ504960.1__WID41994.1__X__00022__D3-68
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 47.0 4.21e-01 100.0% 48.8%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 49.0 4.92e-01 98.4% 72.7%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 41.0 3.29e-01 100.0% 30.3%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 49.0 4.92e-01 96.8% 72.7%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 4.88e-01 95.2% 78.3%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.66 56.0 4.93e-01 100.0% 64.1%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.66 46.0 4.60e-01 100.0% 69.7%
3bpnC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 48.0 4.08e-01 100.0% 48.5%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 54.0 4.89e-01 98.4% 68.7%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 51.0 4.15e-01 100.0% 47.0%
2yuxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 41.0 3.53e-01 100.0% 40.7%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.61 46.0 4.70e-01 96.8% 86.7%
4ecnA02 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.61 47.0 3.75e-01 100.0% 42.6%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 46.0 3.65e-01 100.0% 38.4%
4uhiA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.60 40.0 2.49e-01 71.4% 96.7%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 51.0 4.97e-01 98.4% 89.7%
4c92F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 52.0 4.85e-01 100.0% 84.4%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 50.0 4.82e-01 98.4% 83.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 44.0 3.27e-01 100.0% 31.7%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.57 40.0 3.87e-01 100.0% 63.2%
4q0jA03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.57 40.0 3.18e-01 76.2% 72.5%
1es6A02 2.60.510.10 Mainly Beta › Sandwich › EV matrix protein fold › EV matrix protein 0.55 46.0 4.09e-01 100.0% 98.0%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.56e-01 100.0% 48.2%
7y6oA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.40e-01 100.0% 50.5%
5kycB02 2.20.210.10 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › ubp-family deubiquitinating enzyme superfamily 0.54 40.0 4.25e-01 100.0% 94.3%
3g87A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.54 33.0 3.31e-01 85.7% 56.7%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 41.0 4.09e-01 100.0% 85.3%
3zc4F02 2.30.30.1260 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 3.77e-01 79.4% 87.7%
5hw3A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 37.0 2.56e-01 79.4% 89.2%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.52 42.0 4.09e-01 100.0% 84.2%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 46.0 2.94e-01 100.0% 25.0%
3e3xA01 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.51 43.0 3.65e-01 100.0% 74.3%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 45.0 2.89e-01 100.0% 23.1%
2hgsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 38.0 3.18e-01 100.0% 45.9%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.50 37.0 3.41e-01 100.0% 57.6%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 44.0 2.87e-01 100.0% 23.7%
6izcA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 36.0 2.58e-01 84.1% 80.2%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.50 36.0 3.82e-01 79.4% 94.5%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959440 4.1.1.180 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3107 0.85 76.0 7.59e-01 98.4% 100.0%
4995694 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 67.0 7.18e-01 98.4% 96.4%
3972526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 65.0 6.34e-01 98.4% 91.4%
5036621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 52.0 5.46e-01 98.4% 85.5%
4975764 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.72 53.0 5.11e-01 100.0% 70.0%
5063433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 52.0 5.64e-01 98.4% 96.0%
139950 4.1.1.126 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5608 0.72 51.0 5.33e-01 98.4% 83.9%
5005252 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 49.0 5.50e-01 95.2% 100.0%
4359892 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.71 52.0 4.82e-01 98.4% 61.3%
4478186 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 47.0 5.19e-01 92.1% 95.6%
4147528 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.70 60.0 5.82e-01 98.4% 100.0%
4953913 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.70 51.0 5.24e-01 98.4% 81.7%
4118226 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 54.0 5.26e-01 100.0% 75.7%
4299932 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 54.0 5.41e-01 100.0% 81.5%
5080205 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.69 48.0 5.32e-01 100.0% 92.0%
4662294 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 48.0 5.04e-01 95.2% 83.6%
4448678 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.69 58.0 5.59e-01 100.0% 97.3%
4451993 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 49.0 4.98e-01 98.4% 80.0%
4088209 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 52.0 5.19e-01 100.0% 80.0%
4069793 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 53.0 5.20e-01 100.0% 77.1%
4429329 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 51.0 5.14e-01 96.8% 80.0%
4660084 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 52.0 5.10e-01 100.0% 76.8%
4974211 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.67 49.0 5.03e-01 95.2% 81.7%
4302032 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 51.0 5.14e-01 100.0% 81.5%
5033892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 51.0 5.07e-01 100.0% 83.1%
4499953 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 48.0 4.88e-01 98.4% 80.0%
4527355 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 51.0 5.02e-01 100.0% 78.3%
5004476 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 49.0 4.88e-01 100.0% 76.9%
4347922 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 48.0 4.95e-01 95.2% 83.3%
4476045 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 50.0 4.85e-01 100.0% 75.7%
4332042 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 48.0 4.67e-01 100.0% 71.4%
4941512 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 45.0 4.43e-01 98.4% 67.1%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 49.0 4.85e-01 100.0% 80.0%
3036710 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 47.0 4.77e-01 100.0% 79.4%
4149821 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 45.0 4.62e-01 100.0% 80.0%
4954114 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.63 50.0 5.11e-01 87.3% 98.3%
4185009 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 49.0 4.90e-01 100.0% 83.1%
3602275 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.63 52.0 3.09e-01 92.1% 17.7%
4124780 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 48.0 4.62e-01 100.0% 72.6%
3588755 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 55.0 5.25e-01 100.0% 87.8%
4342110 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 48.0 4.63e-01 100.0% 72.6%
4945344 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 3.00e-01 98.4% 15.7%
4104821 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 48.0 4.61e-01 100.0% 72.0%
5022626 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.62 48.0 4.95e-01 85.7% 95.0%
4084850 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 46.0 4.58e-01 96.8% 78.5%
5046850 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.62 46.0 4.20e-01 100.0% 58.9%
4574546 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 47.0 4.67e-01 98.4% 83.1%
4261362 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 48.0 4.67e-01 100.0% 78.6%
4212091 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 46.0 4.59e-01 100.0% 81.5%
4286562 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 46.0 4.60e-01 100.0% 81.5%
5045214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 47.0 4.59e-01 100.0% 78.6%
5047755 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.60 44.0 3.40e-01 98.4% 35.0%
4139778 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 46.0 4.44e-01 100.0% 74.0%
4505797 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 46.0 4.63e-01 100.0% 83.1%
4995671 3115.1.1.12 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.60 41.0 4.33e-01 100.0% 90.0%
3387119 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.60 45.0 4.11e-01 100.0% 58.9%
4033484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.78e-01 98.4% 87.5%
3590261 822.3.1.1 ↗ a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 0.60 42.0 4.18e-01 100.0% 70.6%
4937731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 42.0 4.29e-01 92.1% 80.0%
4584943 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 46.0 4.47e-01 100.0% 77.1%
4990489 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 43.0 4.63e-01 98.4% 100.0%
3908673 11.1.1.652 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ribophorin_II_3rd 0.58 40.0 3.17e-01 100.0% 33.3%
4003744 5067.1.1.3 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched 0.55 47.0 2.65e-01 98.4% 18.6%
3624908 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 49.0 4.33e-01 100.0% 77.8%
3615237 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.53 38.0 2.43e-01 77.8% 81.9%
3711293 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 42.0 4.21e-01 90.5% 92.3%
4532472 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 37.0 3.31e-01 77.8% 72.0%
3260247 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.51 41.0 3.82e-01 93.7% 88.0%
3223821 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.51 41.0 3.28e-01 92.1% 65.9%