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MH023293.1__AVP40254.1__vBEcoSSa179w3YLVW_00069__00069
Bact-VirMH023293.1__AVP40254.1__vBEcoSSa179w3YLVW_00069__00069
Identity
- Accession:
- MH023293 ↗
- Kingdom:
- phage
Quality
93.5
mean pLDDT
Taxonomy
TaxID: 2126819
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-45
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mamA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.82 | 74.0 | 5.31e-01 | 100.0% | 39.0% |
| 2qdlA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.67 | 51.0 | 4.72e-01 | 90.9% | 98.4% |
| 1flmA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.64 | 50.0 | 3.76e-01 | 90.9% | 82.0% |
| 1f44A01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.64 | 51.0 | 3.47e-01 | 97.7% | 28.9% |
| 4oifA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.63 | 42.0 | 3.74e-01 | 97.7% | 48.4% |
| 3kflA02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.63 | 50.0 | 3.79e-01 | 97.7% | 34.7% |
| 4tn3A01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.62 | 41.0 | 4.25e-01 | 95.5% | 75.0% |
| 4ba0A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.62 | 44.0 | 4.27e-01 | 95.5% | 66.7% |
| 2i2lA01 | 2.10.70.50 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.61 | 47.0 | 4.57e-01 | 90.9% | 94.2% |
| 3nbxX04 | 2.40.128.430 | Mainly Beta › Beta Barrel › Lipocalin › | 0.61 | 48.0 | 3.80e-01 | 95.5% | 69.2% |
| 3we0A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.61 | 49.0 | 3.08e-01 | 95.5% | 66.3% |
| 3jyyA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.60 | 43.0 | 3.11e-01 | 93.2% | 25.4% |
| 3u31A02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.58 | 48.0 | 3.78e-01 | 97.7% | 43.4% |
| 6az1E02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.57 | 42.0 | 4.06e-01 | 79.5% | 64.7% |
| 6b4oA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 46.0 | 3.51e-01 | 100.0% | 90.7% |
| 2wvxA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.56 | 40.0 | 2.55e-01 | 86.4% | 22.4% |
| 4ap5A01 | 3.40.50.11340 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 42.0 | 2.86e-01 | 93.2% | 73.0% |
| 8gn6A01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.54 | 42.0 | 2.58e-01 | 93.2% | 29.1% |
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.53 | 41.0 | 3.91e-01 | 93.2% | 76.8% |
| 2m4vA00 | 2.20.28.270 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A | 0.52 | 39.0 | 3.43e-01 | 100.0% | 50.0% |
| 2jiiA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 41.0 | 3.22e-01 | 93.2% | 77.3% |
| 3zfnA02 | 2.30.140.40 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain | 0.52 | 42.0 | 3.94e-01 | 95.5% | 100.0% |
| 1brzA00 | 3.30.30.10 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › Knottin, scorpion toxin-like | 0.52 | 45.0 | 4.25e-01 | 100.0% | 96.2% |
| 3gqbA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.51 | 42.0 | 3.72e-01 | 100.0% | 62.0% |
| 2x1wO01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 42.0 | 3.39e-01 | 100.0% | 47.4% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3620552 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.74 | 66.0 | 6.37e-01 | 100.0% | 92.0% |
| 5013997 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 52.0 | 5.22e-01 | 97.7% | 73.3% |
| 4008953 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 53.0 | 5.75e-01 | 97.7% | 97.1% |
| 4321324 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 53.0 | 4.81e-01 | 100.0% | 56.9% |
| 3719208 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.71 | 49.0 | 2.86e-01 | 72.7% | 9.8% |
| 3243669 | 4076.2.1.0 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like | 0.68 | 57.0 | 5.16e-01 | 100.0% | 68.3% |
| 4249943 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 49.0 | 4.91e-01 | 100.0% | 80.0% |
| 5068907 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 55.0 | 5.55e-01 | 100.0% | 91.1% |
| 4088784 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 50.0 | 4.97e-01 | 100.0% | 84.4% |
| 3998283 | 3534.1.1.3 ↗ | beta barrels › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › DUF4505 | 0.66 | 54.0 | 4.38e-01 | 93.2% | 87.1% |
| 4943173 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 46.0 | 4.67e-01 | 100.0% | 80.0% |
| 4947515 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 50.0 | 4.66e-01 | 95.5% | 91.7% |
| 4218541 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 45.0 | 4.52e-01 | 100.0% | 77.8% |
| 4890599 | 1.1.7.80 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C | 0.63 | 49.0 | 4.32e-01 | 97.7% | 57.6% |
| 4028908 | 375.14.2.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS2) | 0.62 | 51.0 | 4.74e-01 | 100.0% | 91.7% |
| 3229548 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 49.0 | 4.94e-01 | 97.7% | 93.3% |
| 3605760 | 3534.1.1.0 ↗ | beta barrels › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) | 0.62 | 50.0 | 4.01e-01 | 100.0% | 76.2% |
| 3224532 | 3534.1.1.3 ↗ | beta barrels › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › DUF4505 | 0.61 | 50.0 | 4.20e-01 | 97.7% | 83.1% |
| 4780493 | 3293.1.1.1 ↗ | beta barrels › LARA domain › LARA domain › LARA domain › LARA_dom | 0.61 | 49.0 | 4.26e-01 | 95.5% | 98.6% |
| 4937731 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 46.0 | 4.42e-01 | 97.7% | 76.7% |
| 3417954 | 2.1.1.39 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rbc25 | 0.60 | 41.0 | 3.05e-01 | 72.7% | 51.7% |
| 3972260 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.59 | 48.0 | 3.71e-01 | 97.7% | 96.4% |
| 3715334 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.59 | 47.0 | 2.94e-01 | 95.5% | 55.3% |
| 5024227 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 48.0 | 4.38e-01 | 100.0% | 87.3% |
| 3236073 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.58 | 45.0 | 4.03e-01 | 100.0% | 73.3% |
| 3212772 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.57 | 45.0 | 4.04e-01 | 100.0% | 74.3% |
| 3862276 | 375.1.1.256 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Pellino_RING | 0.57 | 43.0 | 3.92e-01 | 97.7% | 58.7% |
| 3697550 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.57 | 42.0 | 3.75e-01 | 93.2% | 86.3% |
| 3621893 | 376.1.1.75 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Pellino_RING | 0.56 | 43.0 | 3.79e-01 | 100.0% | 53.8% |
| 3926998 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.56 | 45.0 | 3.89e-01 | 97.7% | 57.5% |
| 4526174 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 44.0 | 4.45e-01 | 95.5% | 95.6% |
| 3788174 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.55 | 44.0 | 2.51e-01 | 100.0% | 8.2% |
| 5048038 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 42.0 | 3.99e-01 | 97.7% | 73.3% |
| 5021656 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.55 | 41.0 | 3.98e-01 | 81.8% | 100.0% |
| 3437669 | 708.1.2.12 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › At4g08330 | 0.55 | 40.0 | 3.18e-01 | 86.4% | 55.0% |
| 3184687 | 376.1.6.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain | 0.54 | 39.0 | 3.92e-01 | 88.6% | 100.0% |
| 5049872 | 56.2.1.0 ↗ | beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT | 0.54 | 44.0 | 3.86e-01 | 95.5% | 80.0% |
| 3224077 | 3964.1.1.1 ↗ | beta meanders › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE | 0.52 | 39.0 | 3.41e-01 | 81.8% | 91.4% |
| 4886908 | 4167.1.1.1 ↗ | beta complex topology › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › LlgE_F_G_D1 | 0.52 | 40.0 | 3.77e-01 | 100.0% | 85.7% |
| 3701780 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 39.0 | 2.63e-01 | 86.4% | 33.8% |
| 3588972 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 44.0 | 4.19e-01 | 100.0% | 81.5% |
| 3491126 | 3382.1.1.1 ↗ | alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt | 0.52 | 44.0 | 2.69e-01 | 100.0% | 47.0% |
| 4952429 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.52 | 39.0 | 3.18e-01 | 90.9% | 94.0% |
| 3214343 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 38.0 | 3.31e-01 | 100.0% | 96.7% |