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MH047631.1__AVR56892.1__PBI_TRISCUIT_19__00019

Bact-Vir

MH047631.1__AVR56892.1__PBI_TRISCUIT_19__00019

Identity

Accession:
MH047631 ↗
Kingdom:
phage

Quality

65.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microbacterium_phage_Triscuit

TaxID: 2126721

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-93
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4djhA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.71 56.0 3.81e-01 82.8% 46.7%
6ko5A02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 45.0 3.13e-01 90.8% 46.9%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4978893 3755.3.1.632 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Prefoldin 0.78 67.0 5.61e-01 92.0% 70.7%
3523395 5001.1.1.111 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.78 62.0 4.08e-01 82.8% 43.5%
3921728 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.72 52.0 4.77e-01 81.6% 58.3%
3798829 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.71 51.0 3.76e-01 75.9% 55.6%
4988512 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.66 55.0 4.29e-01 88.5% 87.6%
5060285 109.4.1.5 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.60 47.0 3.34e-01 81.6% 29.7%
D2 high residues 169-221
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fafA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.72 63.0 5.58e-01 100.0% 67.1%
2guzA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.72 60.0 5.47e-01 100.0% 69.0%
2lahA00 1.25.40.430 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.68 55.0 3.91e-01 96.2% 30.0%
2dbgA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.66 55.0 4.58e-01 100.0% 83.5%
2rbdA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.66 56.0 4.14e-01 100.0% 72.7%
7ezyA01 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.65 45.0 3.61e-01 73.6% 89.6%
2guzB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.65 55.0 5.23e-01 100.0% 78.5%
3dplC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 3.90e-01 94.3% 47.0%
2pnkA02 1.10.2020.10 Mainly Alpha › Orthogonal Bundle › uronate isomerase, domain 2, chain A › uronate isomerase, domain 2, chain A 0.64 51.0 4.50e-01 90.6% 61.0%
3oc2A01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.62 49.0 3.49e-01 100.0% 28.3%
3gzsA00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 49.0 2.91e-01 96.2% 60.6%
3oxfA05 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 46.0 4.23e-01 86.8% 69.3%
3c18A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.60 45.0 3.61e-01 84.9% 57.6%
3ephA02 1.10.20.140 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.60 40.0 3.63e-01 71.7% 50.0%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 3.83e-01 94.3% 50.0%
1i5pA02 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.59 50.0 3.36e-01 100.0% 48.7%
4uqxA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 43.0 3.79e-01 86.8% 50.6%
7qx4A01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.58 48.0 3.28e-01 100.0% 44.9%
4cvnA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 47.0 3.30e-01 92.5% 49.7%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 49.0 4.39e-01 100.0% 85.5%
3zs6A03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.56 45.0 3.00e-01 88.7% 44.7%
4ymiB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 48.0 3.22e-01 96.2% 34.3%
3t4rA00 1.20.120.1590 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.54 40.0 3.69e-01 79.2% 58.3%
1fpzC00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 43.0 3.08e-01 98.1% 83.1%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 39.0 2.95e-01 86.8% 35.0%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3705465 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.76 64.0 5.50e-01 100.0% 60.0%
3968363 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.74 62.0 5.94e-01 100.0% 80.0%
3709866 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.74 64.0 5.53e-01 100.0% 62.5%
3252902 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.74 61.0 5.15e-01 100.0% 56.5%
3798465 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.72 60.0 5.59e-01 100.0% 73.8%
3939282 650.1.1.10 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › PF30912 0.72 60.0 5.30e-01 100.0% 64.0%
3491643 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.72 59.0 5.90e-01 100.0% 87.3%
3380775 650.1.1.10 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › PF30912 0.72 59.0 5.89e-01 100.0% 87.3%
4271879 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.71 59.0 5.58e-01 100.0% 75.4%
4547453 650.1.1.2 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › Pam16 0.71 59.0 5.28e-01 100.0% 65.3%
3176955 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.70 61.0 5.21e-01 100.0% 61.2%
3595946 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.68 59.0 5.51e-01 100.0% 78.5%
3269327 650.1.1.2 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › Pam16 0.68 55.0 5.37e-01 100.0% 83.3%
4344857 650.1.1.2 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › Pam16 0.67 60.0 5.09e-01 100.0% 82.4%
3705220 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.67 46.0 3.99e-01 94.3% 45.9%
3786315 650.1.1.2 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › Pam16 0.66 53.0 5.02e-01 100.0% 75.4%
4032446 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.66 50.0 4.53e-01 84.9% 85.3%
3505632 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.64 45.0 3.99e-01 96.2% 50.0%
5012635 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.63 53.0 3.44e-01 100.0% 20.0%
3939322 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 51.0 2.94e-01 96.2% 11.8%
134537 109.4.1.178 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SusD-like 0.61 49.0 2.91e-01 96.2% 60.6%
3576823 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.61 45.0 3.43e-01 94.3% 33.3%
4397003 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.60 47.0 4.82e-01 94.3% 90.0%
3935995 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.60 46.0 4.14e-01 94.3% 58.7%
3701463 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.60 44.0 3.83e-01 94.3% 49.4%
4964234 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.60 51.0 4.71e-01 100.0% 81.4%
3475605 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 40.0 2.84e-01 71.7% 75.0%
3640525 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 46.0 3.27e-01 96.2% 53.2%
5022018 4973.1.1.0 ↗ alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core 0.55 42.0 3.86e-01 96.2% 62.9%
3726085 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.55 41.0 3.58e-01 84.9% 51.8%
3554575 2007.2.3.6 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › CDKN3 0.52 42.0 3.05e-01 100.0% 80.0%
3197266 164.1.1.0 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.51 39.0 3.64e-01 100.0% 65.7%