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MH047631.1__AVR56913.1__PBI_TRISCUIT_40__00040

Bact-Vir

MH047631.1__AVR56913.1__PBI_TRISCUIT_40__00040

Identity

Accession:
MH047631 ↗
Kingdom:
phage

Quality

85.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microbacterium_phage_Triscuit

TaxID: 2126721

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-92
PDB
Domain cluster: rep: NC_041880.1__YP_009595356.1__FDG97_gp219__00131__D6-93
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3aqbA00 1.20.120.1450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.68 61.0 5.29e-01 98.9% 65.9%
1kf6A03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.65 52.0 4.61e-01 90.9% 61.7%
2wdqD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.63 46.0 4.40e-01 77.3% 89.5%
3nrxA00 1.20.58.1520 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 47.0 4.19e-01 98.9% 59.3%
2qupA00 1.20.120.490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain 0.60 45.0 4.09e-01 79.5% 63.9%
2lquA01 1.20.1420.40 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Decorin-binding protein 0.60 44.0 3.72e-01 78.4% 89.0%
5hyhA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.59 49.0 3.50e-01 93.2% 49.1%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.59 49.0 4.05e-01 88.6% 61.8%
1gzsB00 1.10.4120.10 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain 0.59 40.0 3.27e-01 70.5% 64.8%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.58 53.0 3.42e-01 100.0% 27.7%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.58 50.0 4.53e-01 90.9% 77.6%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 51.0 4.25e-01 100.0% 79.2%
2wg7A00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.57 47.0 4.21e-01 88.6% 71.1%
5nl6B01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 47.0 4.20e-01 88.6% 78.5%
2dnxA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 42.0 3.71e-01 100.0% 53.8%
2w3cA02 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.55 44.0 3.08e-01 86.4% 52.8%
2qkdA04 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.54 46.0 4.14e-01 95.5% 70.1%
3jsjC00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 41.0 3.28e-01 81.8% 71.6%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 46.0 4.36e-01 92.0% 79.6%
2jexA01 1.10.287.30 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 0.54 40.0 3.94e-01 79.5% 78.1%
2lvvA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 36.0 2.77e-01 70.5% 29.5%
1vdyA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 46.0 4.02e-01 98.9% 64.3%
6h9dA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.53 44.0 3.84e-01 97.7% 98.0%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.52 42.0 3.96e-01 96.6% 70.3%
1r5aA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 40.0 3.48e-01 81.8% 89.0%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.52 39.0 3.68e-01 79.5% 89.0%
1vw4T01 6.10.330.20 Special › Helix non-globular › Monooxygenase › 0.52 38.0 3.57e-01 78.4% 75.9%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.52 44.0 4.42e-01 93.2% 97.7%
5cmyA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 46.0 3.92e-01 98.9% 71.8%
7lb8B01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.52 38.0 2.65e-01 78.4% 32.2%
2au5A00 1.20.120.590 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › EF2947-like 0.52 37.0 3.33e-01 98.9% 51.9%
3u3iA02 1.20.58.1110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 46.0 4.29e-01 98.9% 91.7%
5wp3B00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.51 41.0 3.93e-01 87.5% 84.3%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3395959 5086.1.1.166 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PEX11 0.65 48.0 4.74e-01 77.3% 93.7%
3470144 109.4.1.1255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.65 50.0 2.98e-01 83.0% 22.9%
4108871 1197.1.1.1 ↗ alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf 0.63 56.0 4.20e-01 100.0% 70.0%
3328692 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.62 51.0 4.36e-01 89.8% 95.2%
4015907 601.33.1.14 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › Erg28 0.62 47.0 4.88e-01 80.7% 92.9%
3277781 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.62 45.0 4.10e-01 76.1% 73.3%
4012726 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 48.0 4.26e-01 81.8% 65.6%
3958889 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 53.0 4.14e-01 92.0% 46.5%
4955536 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.62 53.0 4.07e-01 98.9% 83.2%
3765032 633.23.1.34 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 0.62 52.0 4.38e-01 90.9% 82.8%
3701383 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 49.0 3.77e-01 85.2% 64.6%
5067889 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.61 47.0 4.42e-01 80.7% 93.3%
4381751 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.61 52.0 4.37e-01 94.3% 81.3%
3338844 3285.1.1.7 ↗ alpha duplicates or obligate multimers › Alix V domain › Alix V domain › Alix V domain › SEO_N 0.61 53.0 3.95e-01 97.7% 95.3%
3786466 601.1.2.75 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › PTPLA 0.61 53.0 4.06e-01 100.0% 84.2%
4019886 633.10.1.0 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.61 51.0 4.41e-01 90.9% 90.4%
3881582 310.2.1.31 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › DUF4455 0.60 46.0 4.34e-01 80.7% 98.1%
3380588 109.3.1.30 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › SEO_N 0.60 53.0 3.86e-01 98.9% 92.7%
5050590 3352.1.1.0 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.60 50.0 3.44e-01 94.3% 53.9%
4447448 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.59 53.0 3.82e-01 100.0% 67.8%
3718422 5054.1.1.61 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › ELO 0.59 53.0 3.94e-01 100.0% 78.2%
3673003 3922.1.1.254 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › NET2A_C 0.58 50.0 4.40e-01 92.0% 79.2%
4056158 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 44.0 4.13e-01 93.2% 65.5%
3485696 192.29.1.139 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TRAM_LAG1_CLN8 0.58 48.0 4.25e-01 90.9% 85.4%
3516873 159.1.1.3 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › DUF1599 0.58 39.0 4.06e-01 90.9% 76.2%
3586369 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.57 43.0 3.18e-01 83.0% 70.0%
3923520 3289.1.1.2 ↗ alpha complex topology › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nckap1 0.57 43.0 2.47e-01 83.0% 20.9%
3486748 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.57 48.0 4.55e-01 90.9% 82.9%
3179819 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.57 51.0 4.22e-01 96.6% 75.7%
3211945 633.23.1.14 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_3 0.56 47.0 3.88e-01 94.3% 93.5%
3739367 1002.1.1.1 ↗ alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB 0.55 42.0 3.67e-01 92.0% 52.6%
3927597 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.55 47.0 4.27e-01 94.3% 78.3%
3852486 174.1.1.43 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 0.54 45.0 3.87e-01 94.3% 78.0%
3514683 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 45.0 4.24e-01 92.0% 80.0%
3940791 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 44.0 4.26e-01 88.6% 87.0%
3736821 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.54 47.0 3.84e-01 96.6% 87.9%
4942736 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.54 46.0 4.36e-01 93.2% 87.6%
4834320 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.54 44.0 4.22e-01 100.0% 77.4%
3499583 109.4.1.1196 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Glyco_hydro_15 0.54 37.0 2.73e-01 79.5% 26.2%
None — 0.53 46.0 3.18e-01 100.0% 83.5%
3643155 603.1.1.2 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Not3 0.53 44.0 3.97e-01 90.9% 78.3%
3703063 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.53 43.0 4.28e-01 90.9% 85.3%
3719682 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.52 47.0 4.22e-01 98.9% 100.0%
3770414 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.52 43.0 4.14e-01 92.0% 92.4%
3547352 626.1.1.1 ↗ alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › FH2 0.52 46.0 2.98e-01 100.0% 52.6%
3741453 109.4.1.224 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT1_CAF1_bind 0.52 44.0 3.30e-01 96.6% 96.7%
3818483 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 47.0 3.15e-01 100.0% 58.2%
3900923 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.52 43.0 4.15e-01 92.0% 84.0%
3988700 5082.1.1.1 ↗ alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.51 44.0 3.52e-01 100.0% 70.8%
3887310 604.1.1.136 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_7 0.51 43.0 3.96e-01 93.2% 81.7%
4016736 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 42.0 3.02e-01 98.9% 38.1%