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MH047631.1__AVR56965.1__PBI_TRISCUIT_93__00092

Bact-Vir

MH047631.1__AVR56965.1__PBI_TRISCUIT_93__00092

Identity

Accession:
MH047631 ↗
Kingdom:
phage

Quality

66.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-84
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.82 64.0 6.41e-01 90.6% 82.8%
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.82 75.0 5.19e-01 100.0% 34.2%
6p73A02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.78 70.0 5.36e-01 100.0% 55.9%
2bduA02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.78 56.0 5.37e-01 82.8% 66.2%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.77 66.0 5.69e-01 100.0% 60.8%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 66.0 5.61e-01 96.9% 60.8%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 54.0 5.16e-01 89.1% 65.8%
2fb5A01 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.74 62.0 6.01e-01 96.9% 81.9%
3lbxB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 61.0 5.14e-01 90.6% 56.1%
4l8jA04 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.74 56.0 5.85e-01 93.8% 88.1%
5b1oA00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.74 61.0 6.10e-01 100.0% 92.3%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.73 52.0 5.71e-01 76.6% 98.0%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.72 63.0 6.05e-01 98.4% 85.1%
3terA00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 65.0 5.26e-01 100.0% 74.8%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.72 63.0 5.28e-01 100.0% 57.3%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 53.0 5.16e-01 95.3% 70.4%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 58.0 5.18e-01 95.3% 62.0%
4akgA04 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.72 50.0 3.78e-01 85.9% 30.1%
6qumQ00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.72 60.0 5.81e-01 100.0% 82.4%
5dqqA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 61.0 4.77e-01 93.8% 81.8%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.71 62.0 5.03e-01 96.9% 52.6%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.71 61.0 5.66e-01 98.4% 75.6%
3kr9A02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 49.0 5.01e-01 78.1% 75.4%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.70 55.0 5.56e-01 89.1% 87.5%
3t98B00 6.10.140.1350 Special › Helix non-globular › Helix Hairpins › 0.70 56.0 5.17e-01 96.9% 67.4%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 54.0 4.68e-01 87.5% 53.5%
3mekA04 1.25.40.970 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.70 45.0 4.19e-01 70.3% 52.5%
2ipcA04 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.69 60.0 4.06e-01 96.9% 27.7%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 56.0 5.25e-01 96.9% 71.6%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.69 60.0 5.21e-01 100.0% 71.8%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 59.0 5.54e-01 98.4% 83.5%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.68 50.0 5.18e-01 84.4% 86.7%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.68 59.0 5.20e-01 98.4% 79.2%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.68 57.0 5.39e-01 95.3% 80.5%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.68 56.0 5.18e-01 90.6% 76.5%
3pe0A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 54.0 4.69e-01 92.2% 56.4%
4fwvA02 1.20.120.1680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.68 58.0 4.63e-01 98.4% 47.8%
2jbwA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.67 46.0 4.02e-01 85.9% 45.6%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.67 51.0 4.67e-01 84.4% 62.1%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.66 55.0 5.24e-01 96.9% 80.0%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.66 50.0 5.06e-01 90.6% 82.8%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.66 56.0 5.38e-01 95.3% 82.2%
3sjqC00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 47.0 4.42e-01 87.5% 61.3%
3geeA02 1.20.120.430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 0.65 57.0 4.25e-01 100.0% 44.0%
2a3qA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.65 49.0 4.04e-01 79.7% 47.8%
3vbbE01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.64 56.0 4.64e-01 100.0% 83.2%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 52.0 4.44e-01 95.3% 60.7%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 48.0 4.68e-01 84.4% 78.1%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 47.0 4.83e-01 79.7% 96.7%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 45.0 4.33e-01 79.7% 67.1%
3rrkA02 1.20.1460.20 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › 0.62 54.0 4.11e-01 100.0% 52.9%
2h9dD00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.61 51.0 4.39e-01 90.6% 63.0%
7oq4Z01 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.60 45.0 3.94e-01 81.2% 57.1%
1s5jA04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.59 43.0 4.41e-01 84.4% 82.0%
4gmnA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.58 46.0 2.71e-01 87.5% 21.4%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.57 47.0 4.34e-01 93.8% 70.6%
4wctA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 40.0 2.79e-01 85.9% 69.1%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5052222 3812.1.1.0 alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE 0.83 69.0 6.31e-01 96.9% 69.4%
3219593 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.78 67.0 6.71e-01 98.4% 92.3%
3698292 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.78 69.0 5.30e-01 100.0% 51.0%
3629808 3291.1.1.130 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › CHDCT2 0.77 60.0 5.33e-01 90.6% 60.0%
4000107 3567.1.1.122 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › BAR 0.76 64.0 4.78e-01 98.4% 37.5%
3184698 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.76 65.0 5.81e-01 100.0% 67.8%
3283001 605.1.1.4 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.76 67.0 5.91e-01 100.0% 67.4%
3617130 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.75 67.0 5.87e-01 98.4% 67.4%
4795626 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.75 67.0 4.30e-01 100.0% 22.4%
3404270 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.75 66.0 5.22e-01 98.4% 53.1%
3595797 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.74 58.0 5.07e-01 90.6% 56.8%
3588068 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.74 65.0 5.84e-01 100.0% 71.1%
4612826 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.73 65.0 6.07e-01 100.0% 80.0%
4178099 632.22.1.176 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › PF27734 0.73 65.0 4.89e-01 100.0% 43.9%
5039854 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.73 61.0 5.90e-01 100.0% 82.7%
3780286 244.1.1.6 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase 0.73 65.0 3.75e-01 100.0% 12.0%
3965811 3711.1.1.0 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.73 65.0 5.44e-01 100.0% 61.5%
3181110 5086.1.1.110 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA 0.72 64.0 5.66e-01 100.0% 74.7%
3935633 1203.1.2.1 alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › ASD2 0.72 65.0 4.63e-01 100.0% 35.1%
3638005 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.72 59.0 5.65e-01 98.4% 80.0%
4660205 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.72 63.0 4.99e-01 100.0% 58.5%
3588291 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.72 54.0 5.08e-01 100.0% 66.3%
3251379 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.71 61.0 5.56e-01 95.3% 100.0%
3477880 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.71 64.0 4.12e-01 100.0% 23.1%
3911413 148.1.3.13 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_9 0.71 62.0 3.96e-01 98.4% 22.9%
4297833 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.70 60.0 5.48e-01 100.0% 78.9%
3719904 148.1.3.13 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_9 0.70 60.0 3.77e-01 98.4% 19.2%
3290965 605.1.1.4 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.70 60.0 5.43e-01 100.0% 78.9%
3788311 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.69 60.0 5.00e-01 100.0% 55.7%
5029796 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.68 58.0 4.81e-01 98.4% 55.8%
3967290 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.68 57.0 5.62e-01 96.9% 91.4%
3770414 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 59.0 5.05e-01 98.4% 64.8%
1068675 3714.1.1.0 a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.68 58.0 4.30e-01 98.4% 37.0%
4045132 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.67 57.0 4.87e-01 98.4% 60.0%
3686033 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.67 58.0 3.69e-01 100.0% 42.0%
3595910 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.67 56.0 5.28e-01 100.0% 77.5%
3642338 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.67 60.0 5.72e-01 100.0% 88.0%
3490268 148.1.3.13 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_9 0.67 57.0 3.67e-01 100.0% 21.5%
3762595 604.7.1.13 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › HR1 0.66 58.0 5.20e-01 98.4% 68.9%
3839497 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.66 54.0 5.02e-01 95.3% 72.9%
3790121 603.1.1.114 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › HR1 0.65 56.0 4.84e-01 96.9% 61.0%
4000262 192.5.1.1 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 0.65 56.0 5.02e-01 96.9% 67.8%
3465927 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.63 49.0 4.61e-01 84.4% 67.5%
3761056 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.63 50.0 4.55e-01 85.9% 96.5%
3725376 192.1.1.15 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF6604 0.60 47.0 4.40e-01 90.6% 68.8%