←Back to structures

MH051918.1__AWD92280.1__X__00080

Bact-Vir

MH051918.1__AWD92280.1__X__00080

Identity

Accession:
MH051918 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Badaguanvirus› Escherichia_phage_vB_EcoS_IME347

TaxID: 2496546

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-46
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wknF00 6.20.50.120 Special › Other non-globular › N-terminal domain of TfIIb › 0.76 59.0 5.85e-01 82.2% 93.5%
6p2lA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.73 65.0 3.79e-01 100.0% 87.8%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.72 50.0 3.48e-01 71.1% 47.5%
4by6C00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.71 60.0 4.04e-01 97.8% 26.1%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.71 63.0 3.77e-01 100.0% 79.5%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.69 61.0 3.65e-01 100.0% 81.1%
3pggA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 58.0 4.92e-01 100.0% 76.9%
5wbyC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 53.0 3.23e-01 88.9% 30.7%
1sqjB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 52.0 3.04e-01 88.9% 29.0%
3jb9L00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 50.0 3.12e-01 88.9% 31.1%
1jmxB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 53.0 3.20e-01 100.0% 85.5%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 45.0 4.18e-01 82.2% 60.9%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 52.0 3.20e-01 100.0% 56.1%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.62 51.0 3.14e-01 95.6% 47.1%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 49.0 2.93e-01 91.1% 25.0%
2qe8A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.62 50.0 3.02e-01 93.3% 81.0%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 45.0 2.81e-01 84.4% 22.0%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 47.0 4.22e-01 86.7% 71.6%
4j0wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 51.0 3.16e-01 100.0% 82.9%
2gtiA01 3.30.160.820 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like 0.61 45.0 4.09e-01 82.2% 87.5%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 49.0 2.97e-01 93.3% 13.3%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 41.0 3.87e-01 82.2% 56.9%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 51.0 3.10e-01 100.0% 86.2%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.59 48.0 4.23e-01 97.8% 72.6%
3h41A03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.58 48.0 3.65e-01 100.0% 43.7%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.58 43.0 3.67e-01 82.2% 53.8%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.57 48.0 2.94e-01 100.0% 99.1%
2jxwA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.57 39.0 3.35e-01 71.1% 76.0%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 3.76e-01 100.0% 79.2%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 46.0 3.74e-01 100.0% 48.5%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.57 43.0 4.11e-01 91.1% 70.2%
5egjA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 40.0 2.81e-01 75.6% 58.7%
3mcbB00 2.20.70.30 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain 0.56 40.0 3.85e-01 82.2% 89.7%
6whjD00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 38.0 2.38e-01 73.3% 41.3%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 43.0 3.41e-01 100.0% 43.9%
1r3fA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.56 38.0 3.44e-01 73.3% 92.3%
2jn4A00 2.40.50.240 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NifT/FixU-like 0.55 48.0 4.24e-01 100.0% 86.4%
4o2hA00 3.10.450.610 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 48.0 3.44e-01 100.0% 73.7%
3vrdB03 3.90.760.10 Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain 0.53 37.0 3.35e-01 80.0% 87.8%
1dp4C02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 41.0 2.73e-01 88.9% 55.9%
2p39A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 45.0 3.19e-01 100.0% 64.1%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.52 39.0 3.24e-01 91.1% 52.5%
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.52 38.0 3.27e-01 93.3% 59.1%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.75 63.0 3.95e-01 93.3% 48.4%
4961804 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 64.0 5.46e-01 100.0% 82.7%
3803782 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.74 63.0 3.72e-01 93.3% 34.1%
3715537 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.74 61.0 4.19e-01 97.8% 27.2%
3813872 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.73 61.0 3.66e-01 93.3% 35.0%
3802860 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.72 57.0 3.46e-01 93.3% 16.0%
5033737 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.72 63.0 4.14e-01 100.0% 71.3%
5052205 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.71 60.0 3.33e-01 97.8% 83.5%
1700274 5.1.4.181 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BNR 0.71 56.0 3.23e-01 88.9% 28.2%
4025576 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 59.0 3.70e-01 95.6% 33.9%
3589313 10.1.1.41 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.69 60.0 3.93e-01 100.0% 65.5%
3338126 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.66 54.0 3.38e-01 93.3% 45.5%
None — 0.66 52.0 3.16e-01 93.3% 14.1%
4955324 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.65 48.0 3.07e-01 84.4% 73.3%
3506771 5.1.5.75 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.65 52.0 3.14e-01 91.1% 12.2%
None — 0.64 50.0 3.11e-01 93.3% 15.0%
None — 0.63 54.0 3.25e-01 100.0% 75.5%
2227 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 53.0 3.20e-01 100.0% 85.5%
3347232 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 49.0 2.98e-01 93.3% 43.3%
5059043 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 50.0 3.01e-01 93.3% 12.5%
None — 0.62 54.0 3.44e-01 100.0% 39.5%
5047738 5.1.5.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.60 49.0 2.94e-01 95.6% 61.8%
3320473 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.60 50.0 3.08e-01 100.0% 77.9%
4302614 3124.1.1.1 ↗ beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC 0.58 42.0 3.53e-01 82.2% 59.6%
3807776 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.58 46.0 2.86e-01 97.8% 78.2%
3578805 311.1.1.2 ↗ a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Band_3_cyto 0.57 44.0 3.44e-01 88.9% 48.2%
1489617 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.56 44.0 3.39e-01 100.0% 40.8%
3858714 3124.1.1.1 ↗ beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC 0.56 40.0 3.81e-01 82.2% 88.3%
5068097 2484.1.1.71 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RACo_C_ter 0.56 42.0 2.53e-01 88.9% 33.0%
3293816 2.1.1.81 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.56 40.0 3.32e-01 80.0% 65.6%
3232865 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 41.0 3.10e-01 88.9% 66.7%
3578444 375.1.1.184 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TOP3B 0.55 38.0 3.36e-01 80.0% 53.8%
4028093 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 42.0 3.20e-01 91.1% 68.8%
4947252 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 38.0 3.85e-01 82.2% 77.8%
5044373 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 3.91e-01 100.0% 86.7%
4987925 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 3.34e-01 84.4% 95.0%
5039051 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 2.91e-01 80.0% 96.8%
3391203 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.52 35.0 3.33e-01 77.8% 64.6%
3623874 2.1.1.51 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 0.51 36.0 2.84e-01 88.9% 65.2%