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MH059633.1__AWD92455.1__X__00060

Bact-Vir

MH059633.1__AWD92455.1__X__00060

Identity

Accession:
MH059633 ↗
Kingdom:
phage

Quality

74.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lindbergviridae› Carpasinavirus› Xanthomonas_phage_Carpasina

TaxID: 2163636

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 38-90
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.66 58.0 5.53e-01 100.0% 85.5%
2pwyA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.66 56.0 5.55e-01 100.0% 96.5%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.65 55.0 5.25e-01 100.0% 85.9%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.65 55.0 5.06e-01 100.0% 76.4%
5dudC02 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.61 45.0 3.41e-01 83.0% 56.9%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.61 41.0 2.99e-01 71.7% 64.3%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.61 50.0 5.02e-01 94.3% 100.0%
5adxJ01 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.59 49.0 4.22e-01 100.0% 82.8%
1zc1A02 3.10.330.10 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.58 49.0 4.34e-01 100.0% 66.2%
2qwvA00 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.56 47.0 3.24e-01 98.1% 26.6%
3iayA06 6.10.140.1540 Special › Helix non-globular › Helix Hairpins › 0.56 32.0 3.62e-01 96.2% 76.3%
2e9yB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.53 42.0 2.68e-01 94.3% 20.5%
5a48B00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.52 38.0 3.21e-01 79.2% 57.3%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.29e-01 96.2% 48.3%
1u6mA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 35.0 2.52e-01 73.6% 50.8%
4onyA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 35.0 2.30e-01 79.2% 32.8%
2vraA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 37.0 3.23e-01 100.0% 47.5%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
139162 284.1.1.9 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N 0.66 58.0 5.56e-01 100.0% 86.9%
5047456 284.1.1.9 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N 0.63 53.0 5.12e-01 98.1% 93.3%
5042178 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.62 53.0 5.14e-01 100.0% 88.3%
4942336 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.62 51.0 4.98e-01 100.0% 86.7%
3926578 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.60 51.0 4.45e-01 100.0% 92.9%
3832300 323.1.1.7 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Transferase 0.59 54.0 3.45e-01 100.0% 31.1%
5062018 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 40.0 2.82e-01 100.0% 24.7%
3512849 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.58 40.0 3.85e-01 98.1% 63.3%
3488518 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.56 45.0 3.61e-01 100.0% 46.0%
4486611 4354.1.1.1 ↗ a+b two layers › TRCF domain › TRCF domain › TRCF domain › TRCF 0.54 38.0 2.81e-01 75.5% 37.3%
5082591 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.53 45.0 2.78e-01 100.0% 74.4%
3940681 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 2.48e-01 100.0% 12.5%
3885335 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.51 38.0 3.27e-01 100.0% 46.0%
3616697 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 3.43e-01 94.3% 63.1%
3416370 101.1.2.118 ↗ alpha arrays › HTH › HTH › winged helix domain › Dcc1 0.51 36.0 3.41e-01 94.3% 63.1%
3718390 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 34.0 3.19e-01 94.3% 52.0%
3269336 310.1.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain 0.50 41.0 3.18e-01 90.6% 52.5%
3880391 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.50 39.0 3.28e-01 100.0% 46.7%