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MH059635.1__AWD90270.1__X__00022

Bact-Vir

MH059635.1__AWD90270.1__X__00022

Identity

Accession:
MH059635 ↗
Kingdom:
phage

Quality

89.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Dickeya_phage_Amaethon

TaxID: 2163629

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-79
PDB
Domain cluster: rep: KX826077.1__APU03087.1__X__00012__D56-125
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 51.0 4.42e-01 76.6% 60.2%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.59 52.0 4.25e-01 98.7% 95.9%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.56 48.0 3.80e-01 98.7% 88.8%
2xzm600 2.20.25.100 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27 0.54 36.0 3.64e-01 70.1% 71.2%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 41.0 3.34e-01 83.1% 82.8%
1a8pA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 44.0 4.13e-01 93.5% 93.7%
1r8nA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 37.0 2.93e-01 79.2% 93.0%
3ir9A02 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.51 40.0 3.53e-01 87.0% 65.8%
1wlfA02 3.10.330.10 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.51 38.0 3.78e-01 79.2% 92.5%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3385437 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.88 67.0 6.05e-01 85.7% 61.0%
4554209 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.86 67.0 5.87e-01 85.7% 57.3%
3964437 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.84 67.0 5.81e-01 85.7% 58.2%
4032331 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.83 67.0 5.73e-01 84.4% 61.7%
4421311 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.82 66.0 5.77e-01 85.7% 59.1%
3988098 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.82 67.0 5.63e-01 85.7% 61.7%
4674798 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.82 68.0 5.88e-01 87.0% 62.7%
2392036 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.81 66.0 5.72e-01 85.7% 58.4%
3970095 3430.1.1.0 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain 0.79 66.0 5.69e-01 88.3% 60.9%
4083034 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.79 66.0 5.76e-01 88.3% 65.5%
4486406 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.78 64.0 5.58e-01 92.2% 60.0%
4956150 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 46.0 5.24e-01 75.3% 96.4%
4086239 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 42.0 4.82e-01 70.1% 94.5%
4096587 3174.2.1.2 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › OrtA 0.62 44.0 4.24e-01 75.3% 94.4%
3495262 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.58 51.0 3.91e-01 98.7% 87.2%
3949431 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.57 50.0 4.07e-01 98.7% 88.0%
5034902 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.57 44.0 3.62e-01 84.4% 56.6%
4151900 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.56 44.0 3.59e-01 84.4% 57.6%
4993853 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.56 49.0 3.86e-01 98.7% 97.6%
3213450 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.56 41.0 3.93e-01 79.2% 67.8%
3981111 1.1.7.89 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.56 43.0 3.53e-01 85.7% 63.9%
4563045 3767.1.1.0 ↗ a+b two layers › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain 0.55 46.0 3.56e-01 94.8% 87.8%
3839271 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.54 45.0 3.67e-01 94.8% 94.8%
5049794 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.54 41.0 3.40e-01 83.1% 57.2%
4983823 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.53 42.0 3.50e-01 88.3% 75.4%
4568169 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 39.0 3.73e-01 79.2% 87.8%
3594625 229.1.1.0 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.52 38.0 3.44e-01 76.6% 96.2%
3490350 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 36.0 3.84e-01 74.0% 96.9%
4325944 3767.1.1.0 ↗ a+b two layers › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain 0.51 42.0 3.64e-01 93.5% 100.0%
4361789 3767.1.1.0 ↗ a+b two layers › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain 0.51 39.0 3.38e-01 88.3% 92.6%
3747363 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.51 37.0 3.62e-01 77.9% 82.4%
3619619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 36.0 3.74e-01 77.9% 87.1%
5031732 1.1.1.8 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.50 40.0 3.58e-01 89.6% 80.9%
D2 high residues 83-131
PDB
Domain cluster: representative