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MH059636.2__AWD90506.1__X__00067
Bact-VirMH059636.2__AWD90506.1__X__00067
Identity
- Accession:
- MH059636 ↗
- Kingdom:
- phage
Quality
73.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Risoevirus›
Erwinia_phage_Cronus
TaxID: 2163633
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-85
Domain cluster:
rep: OP946502.1__WBF78912.1__ADLP2_115__00115__D11-90
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10465.17 best | Inhibitor_I24 | 75.1 | 7.80e-21 | 100.0% | 54.4% |
D2
medium
residues 98-133
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j2jB00 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.90 | 79.0 | 7.61e-01 | 100.0% | 87.8% |
| 4v19W00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.90 | 76.0 | 4.79e-01 | 94.4% | 20.5% |
| 3oo3A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.90 | 78.0 | 4.38e-01 | 97.2% | 11.6% |
| 1um8A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.89 | 74.0 | 4.42e-01 | 94.4% | 14.3% |
| 7cgfA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.81 | 59.0 | 3.38e-01 | 100.0% | 8.6% |
| 3txsC01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.81 | 70.0 | 5.51e-01 | 100.0% | 49.3% |
| 5x8tT00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.80 | 64.0 | 4.29e-01 | 94.4% | 23.6% |
| 3m1cB01 | 3.30.390.170 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.80 | 63.0 | 4.54e-01 | 91.7% | 34.9% |
| 3ppuB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.79 | 66.0 | 4.73e-01 | 100.0% | 40.7% |
| 1cfzA00 | 3.40.50.1450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HybD-like | 0.79 | 69.0 | 4.38e-01 | 97.2% | 32.7% |
| 4xt1A00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.77 | 64.0 | 3.78e-01 | 100.0% | 12.7% |
| 1owlA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.76 | 62.0 | 4.38e-01 | 100.0% | 35.8% |
| 8fbnB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.75 | 65.0 | 3.97e-01 | 100.0% | 36.9% |
| 2wwwC01 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.73 | 59.0 | 5.44e-01 | 100.0% | 76.9% |
| 2xi5A00 | 3.40.91.60 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.72 | 60.0 | 3.79e-01 | 97.2% | 18.5% |
| 4c0qB00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.72 | 57.0 | 3.10e-01 | 100.0% | 8.8% |
| 2qywA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.72 | 55.0 | 4.32e-01 | 100.0% | 38.9% |
| 4dciA00 | 6.10.140.1110 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 60.0 | 4.01e-01 | 97.2% | 25.2% |
| 1xjaB00 | 2.60.120.280 | Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC | 0.72 | 57.0 | 3.85e-01 | 97.2% | 23.4% |
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.70 | 53.0 | 4.48e-01 | 94.4% | 100.0% |
| 1r4gA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.70 | 52.0 | 4.63e-01 | 86.1% | 56.6% |
| 8sorA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.70 | 55.0 | 3.28e-01 | 100.0% | 21.3% |
| 4hkaA02 | 1.10.287.3810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 54.0 | 5.04e-01 | 100.0% | 74.5% |
| 2h1jA00 | 1.10.1370.30 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › | 0.68 | 51.0 | 2.88e-01 | 100.0% | 17.3% |
| 3kkbA00 | 1.20.120.880 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain | 0.67 | 55.0 | 3.88e-01 | 100.0% | 46.0% |
| 4fb2A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.67 | 50.0 | 2.95e-01 | 100.0% | 9.4% |
| 2ee4A01 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.66 | 56.0 | 3.56e-01 | 100.0% | 34.4% |
| 1iurA01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.66 | 50.0 | 4.48e-01 | 100.0% | 71.4% |
| 1jr8A00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.64 | 53.0 | 3.90e-01 | 97.2% | 36.2% |
| 2py5A04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.62 | 45.0 | 4.55e-01 | 97.2% | 97.2% |
| 2oh3A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.62 | 49.0 | 3.42e-01 | 100.0% | 26.4% |
| 4ktwA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.62 | 54.0 | 3.49e-01 | 100.0% | 83.1% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.60 | 42.0 | 2.63e-01 | 72.2% | 55.2% |
| 4fd4A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 52.0 | 3.30e-01 | 100.0% | 17.9% |
| 2elcA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.56 | 41.0 | 3.64e-01 | 97.2% | 53.7% |
| 1puzA00 | 1.10.150.250 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Flavinator of succinate dehydrogenase | 0.52 | 38.0 | 3.24e-01 | 94.4% | 42.7% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3236155 | 604.6.1.4 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GGA_N-GAT | 0.94 | 82.0 | 8.38e-01 | 97.2% | 100.0% |
| 3489042 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.92 | 78.0 | 7.53e-01 | 94.4% | 85.0% |
| 3855165 | 604.6.1.65 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT, GGA_N-GAT | 0.89 | 76.0 | 5.12e-01 | 97.2% | 27.7% |
| 3793141 | 109.4.1.1312 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30475 | 0.89 | 75.0 | 4.62e-01 | 97.2% | 17.5% |
| 3388729 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.87 | 71.0 | 7.24e-01 | 97.2% | 97.1% |
| 4973336 | 4163.1.1.4 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › PF27418 | 0.87 | 75.0 | 5.30e-01 | 100.0% | 33.6% |
| 3498467 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.83 | 71.0 | 3.88e-01 | 100.0% | 6.3% |
| 1712010 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.82 | 69.0 | 6.20e-01 | 100.0% | 67.9% |
| 3170639 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.81 | 69.0 | 5.31e-01 | 100.0% | 44.7% |
| 3971032 | 1051.1.1.1 ↗ | alpha superhelices › Putative 3-oxoacyl-(acyl-carrier-protein) synthase N-terminal domain › Putative 3-oxoacyl-(acyl-carrier-protein) synthase N-terminal domain › Putative 3-oxoacyl-(acyl-carrier-protein) synthase N-terminal domain › HOASN | 0.80 | 65.0 | 4.98e-01 | 97.2% | 57.8% |
| 4059065 | 622.1.1.1 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C | 0.79 | 67.0 | 4.93e-01 | 100.0% | 37.4% |
| 3927675 | 2004.1.1.600 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn, AAA_21 | 0.79 | 65.0 | 3.58e-01 | 97.2% | 6.3% |
| 3601706 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.79 | 65.0 | 3.57e-01 | 97.2% | 6.5% |
| 3602308 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.78 | 60.0 | 4.17e-01 | 86.1% | 27.3% |
| 4954486 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.78 | 64.0 | 4.01e-01 | 100.0% | 17.1% |
| 3752055 | 109.4.1.98 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.78 | 64.0 | 4.69e-01 | 100.0% | 35.2% |
| 3648207 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.77 | 63.0 | 3.44e-01 | 97.2% | 5.8% |
| 3946399 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.77 | 62.0 | 4.28e-01 | 94.4% | 26.9% |
| 3988736 | 632.17.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › C protein alpha-antigen helical bundle domain › C protein alpha-antigen helical bundle domain | 0.77 | 61.0 | 5.41e-01 | 100.0% | 61.7% |
| 4129922 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.76 | 63.0 | 4.67e-01 | 100.0% | 38.0% |
| 4258985 | 4229.1.1.2 ↗ | alpha bundles › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › Trp_dioxygenase | 0.75 | 64.0 | 3.67e-01 | 100.0% | 10.7% |
| 4503293 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.74 | 61.0 | 3.48e-01 | 100.0% | 9.4% |
| 4048446 | 148.1.3.26 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 | 0.73 | 61.0 | 3.79e-01 | 100.0% | 16.1% |
| 3433875 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.72 | 54.0 | 3.62e-01 | 97.2% | 20.6% |
| 4975245 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.72 | 62.0 | 4.70e-01 | 100.0% | 42.0% |
| 3826523 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.72 | 60.0 | 3.84e-01 | 97.2% | 36.5% |
| 3825782 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.72 | 57.0 | 3.84e-01 | 100.0% | 22.9% |
| 3802543 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.70 | 55.0 | 3.01e-01 | 97.2% | 5.6% |
| 3650245 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.68 | 58.0 | 3.84e-01 | 100.0% | 44.0% |
| 3642163 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.68 | 55.0 | 3.48e-01 | 100.0% | 30.7% |
| 3645380 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.63 | 53.0 | 3.41e-01 | 100.0% | 35.1% |
| 3384110 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.63 | 51.0 | 3.38e-01 | 100.0% | 36.5% |
| 3225351 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.61 | 51.0 | 3.00e-01 | 100.0% | 11.7% |