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MH059636.2__AWD90543.1__X__00104

Bact-Vir

MH059636.2__AWD90543.1__X__00104

Identity

Accession:
MH059636 ↗
Kingdom:
phage

Quality

77.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-57
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.81 71.0 6.28e-01 100.0% 70.5%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.77 65.0 6.08e-01 92.5% 100.0%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.75 66.0 6.09e-01 98.1% 76.5%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.74 64.0 6.13e-01 100.0% 85.2%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.72 60.0 4.94e-01 96.2% 86.3%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.72 61.0 5.97e-01 100.0% 89.7%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.71 63.0 5.44e-01 100.0% 68.3%
1pd3A00 1.10.287.230 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 59.0 5.88e-01 96.2% 100.0%
6xm1A02 3.90.830.10 Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a 0.70 57.0 4.40e-01 88.7% 52.2%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.69 62.0 4.85e-01 100.0% 54.5%
1kmiZ02 1.10.287.500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.69 59.0 4.40e-01 96.2% 44.8%
3rlfF01 1.20.58.370 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › MalF N-terminal region-like 0.69 57.0 4.93e-01 94.3% 60.5%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.69 60.0 4.34e-01 96.2% 38.6%
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.68 60.0 4.31e-01 100.0% 74.4%
2q1kA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.68 55.0 5.60e-01 100.0% 100.0%
5ffdA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.67 59.0 4.27e-01 96.2% 41.6%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.67 58.0 5.05e-01 98.1% 84.0%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.66 58.0 4.20e-01 98.1% 100.0%
3fxdC00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.66 52.0 5.39e-01 92.5% 94.0%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.66 57.0 5.54e-01 96.2% 96.6%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.66 55.0 5.18e-01 96.2% 77.6%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.65 55.0 5.34e-01 98.1% 85.2%
7vkcA01 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.65 52.0 3.65e-01 84.9% 28.5%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 59.0 4.85e-01 100.0% 57.6%
4hteA03 1.10.167.30 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.65 51.0 4.54e-01 88.7% 60.0%
1gwcA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.65 56.0 4.15e-01 100.0% 37.6%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 53.0 4.24e-01 96.2% 47.3%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.63 51.0 5.18e-01 96.2% 98.1%
4yt2A02 1.20.120.1300 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hmd, C-terminal helical subdomain 0.63 50.0 4.14e-01 92.5% 47.2%
2z3xA00 6.10.10.80 Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like 0.63 49.0 4.82e-01 86.8% 80.4%
2kiwA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.63 49.0 4.25e-01 88.7% 53.5%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.63 53.0 4.90e-01 100.0% 73.2%
3cbuA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 49.0 3.74e-01 88.7% 41.8%
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 53.0 4.20e-01 98.1% 56.1%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 51.0 4.64e-01 100.0% 66.2%
5mmjb02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 46.0 4.66e-01 86.8% 80.8%
2oyyA00 6.10.80.10 Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP) 0.62 47.0 4.41e-01 88.7% 94.4%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.61 50.0 4.61e-01 100.0% 74.7%
3e22A03 1.10.287.600 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.61 49.0 4.93e-01 96.2% 88.9%
1y1uA01 1.20.1050.20 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain 0.61 53.0 3.64e-01 100.0% 28.7%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 51.0 4.65e-01 100.0% 85.5%
2fh5A01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 48.0 3.84e-01 100.0% 44.3%
2x9xA04 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 43.0 4.35e-01 96.2% 96.3%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3879791 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.86 78.0 5.00e-01 100.0% 23.6%
4937584 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.82 73.0 6.50e-01 100.0% 70.7%
3640330 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.80 71.0 5.20e-01 100.0% 40.0%
3236471 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.79 68.0 4.29e-01 100.0% 18.9%
4353391 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.78 67.0 3.75e-01 96.2% 30.7%
3259629 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.78 67.0 5.54e-01 100.0% 60.0%
3417201 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.77 68.0 4.68e-01 100.0% 32.0%
3279027 150.8.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE › PPE 0.76 68.0 4.69e-01 100.0% 30.9%
4966166 5038.2.1.12 alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like › TrbL_3 0.76 65.0 4.40e-01 100.0% 36.0%
4034278 5043.1.1.0 extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like 0.75 66.0 6.34e-01 100.0% 88.3%
4569675 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.75 64.0 5.01e-01 92.5% 48.6%
3833733 5076.2.1.9 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › Choline_transpo 0.75 67.0 4.25e-01 100.0% 36.2%
4942548 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 65.0 4.71e-01 98.1% 34.7%
3970470 605.1.1.174 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HAMP 0.74 65.0 5.09e-01 100.0% 46.1%
3613914 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.73 64.0 5.64e-01 96.2% 69.3%
3569033 3538.1.1.8 extended segments › MerF › MerF › MerF › PF28754 0.73 62.0 6.20e-01 98.1% 98.2%
4385742 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.72 62.0 5.26e-01 100.0% 57.8%
154974 150.5.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.72 63.0 5.57e-01 98.1% 67.5%
5041482 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.72 62.0 5.10e-01 96.2% 54.7%
3764271 3922.1.1.348 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › CC_CDK5RAP2 0.71 60.0 4.65e-01 98.1% 77.6%
3462297 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 63.0 5.54e-01 96.2% 70.7%
3968484 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.71 64.0 5.81e-01 100.0% 75.7%
3246869 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.70 62.0 4.01e-01 100.0% 21.7%
3620869 101.1.9.106 alpha arrays › HTH › HTH › Putative DNA-binding domain › Ion_trans 0.70 61.0 5.05e-01 98.1% 78.9%
4116779 603.1.1.174 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › HisKA 0.70 62.0 5.50e-01 100.0% 69.3%
4449117 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.70 61.0 5.36e-01 100.0% 66.3%
3297770 622.4.1.26 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › HisKA 0.69 61.0 5.18e-01 100.0% 61.2%
4257134 192.5.1.35 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › Hobbit 0.69 61.0 4.86e-01 96.2% 56.0%
4199194 109.4.1.83 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf 0.69 60.0 3.65e-01 98.1% 18.5%
3466345 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.69 60.0 5.45e-01 100.0% 74.3%
2409294 601.52.1.1 alpha bundles › Four-helical up-and-down bundle › Flagellar hook-associated protein 1 helical domain › Flagellar hook-associated protein 1 helical domain › Flagellin_N 0.68 59.0 4.45e-01 100.0% 39.3%
4574972 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.68 59.0 5.72e-01 96.2% 85.0%
3849547 4992.1.1.25 extended segments › RelB-like › RelB-like › RelB-like › SHCBP_N 0.68 59.0 4.90e-01 100.0% 75.8%
2720300 192.22.1.1 alpha bundles › Long alpha-hairpin › Ral binding domain of RLIP76 › Ral binding domain of RLIP76 › RLIP76_Ral-bd 0.68 57.0 5.80e-01 92.5% 100.0%
3497641 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.68 59.0 4.83e-01 100.0% 61.0%
3416168 4177.1.1.4 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › IMD 0.68 60.0 3.94e-01 100.0% 76.8%
4034201 192.7.1.1 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB 0.68 60.0 5.74e-01 98.1% 88.3%
3957419 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.68 58.0 5.28e-01 100.0% 70.7%
3820045 603.1.1.118 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF7610 0.67 59.0 5.10e-01 100.0% 64.7%
3495636 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 59.0 3.34e-01 100.0% 8.8%
None 0.67 57.0 3.85e-01 100.0% 25.5%
3906467 1008.1.1.106 alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › CSN5_C 0.67 57.0 4.87e-01 100.0% 62.2%
3604531 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.66 59.0 4.48e-01 100.0% 43.2%
4311810 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.66 59.0 5.25e-01 100.0% 70.7%
3516461 603.1.1.103 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF29732 0.66 58.0 4.56e-01 98.1% 50.9%
3704 601.1.1.1 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.66 56.0 5.14e-01 100.0% 93.1%
3234298 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.66 55.0 5.44e-01 96.2% 89.1%
4591712 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 54.0 3.78e-01 96.2% 29.1%
3969538 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.65 56.0 5.56e-01 100.0% 96.4%
5057547 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.63 53.0 4.37e-01 98.1% 53.0%
1878710 4970.1.1.1 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B 0.62 51.0 5.11e-01 98.1% 92.9%
4124331 192.15.1.76 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › CUPID 0.62 55.0 4.34e-01 100.0% 48.2%
4982831 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.62 55.0 3.18e-01 100.0% 11.3%
3580104 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.61 49.0 4.23e-01 96.2% 54.7%