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MH059637.1__AWD92482.1__X__00001
Bact-VirMH059637.1__AWD92482.1__X__00001
Identity
- Accession:
- MH059637 ↗
- Kingdom:
- phage
Quality
73.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autotranscriptaviridae›
Jarilovirus›
Pectobacterium_phage_Jarilo
TaxID: 2163634
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-154
Domain cluster:
rep: PH2015_18_scaffold_2_prodigal-single.1__X__X__00357__D3-170
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23780.2 best | S-AdoMet_lyase | 123.9 | 6.00e-36 | 100.0% | 99.2% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cqmA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.71 | 44.0 | 5.33e-01 | 95.4% | 95.9% |
| 2mdaA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.67 | 35.0 | 4.36e-01 | 92.8% | 81.1% |
| 3mcnA01 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.61 | 49.0 | 4.99e-01 | 100.0% | 87.1% |
| 1rtzA00 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.58 | 49.0 | 4.98e-01 | 100.0% | 92.8% |
| 3r8jA00 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.52 | 46.0 | 4.42e-01 | 100.0% | 83.3% |
| 1pfsA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 23.0 | 3.16e-01 | 85.6% | 80.8% |
| 2qv8A00 | 3.55.40.10 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain | 0.51 | 32.0 | 3.37e-01 | 88.9% | 68.1% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3375055 | 304.114.1.2 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N | 0.62 | 40.0 | 4.84e-01 | 79.7% | 100.0% |
| 1915668 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.58 | 50.0 | 4.67e-01 | 93.5% | 81.8% |
| 3614143 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.55 | 36.0 | 3.98e-01 | 75.8% | 80.6% |
| 4952012 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 34.0 | 2.76e-01 | 95.4% | 32.5% |
| 4106050 | 316.1.1.6 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Mab-21 | 0.51 | 41.0 | 3.54e-01 | 85.6% | 88.2% |
| 3198214 | 274.1.1.48 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7924 | 0.51 | 25.0 | 3.47e-01 | 81.7% | 100.0% |
| 3869953 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 43.0 | 3.23e-01 | 92.8% | 72.5% |
| 3365246 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.50 | 34.0 | 3.28e-01 | 71.2% | 60.6% |
D2
medium
residues 160-227