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MH105080.1__AWD93099.1__X__00001
Bact-VirMH105080.1__AWD93099.1__X__00001
Identity
- Accession:
- MH105080 ↗
- Kingdom:
- phage
Quality
68.2
mean pLDDT
Taxonomy
Abadenavirae›
Produgelaviricota›
Belvinaviricetes›
Vinavirales›
Mestraviridae›
Polymedevirus›
Marinomonas_phage_YY
TaxID: 2163588
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 62-150
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1w53A00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.61 | 36.0 | 3.68e-01 | 80.9% | 59.5% |
| 2cfqA01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.61 | 48.0 | 3.74e-01 | 85.4% | 70.7% |
| 7craA02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 44.0 | 4.45e-01 | 94.4% | 96.7% |
| 3nkeA00 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.52 | 42.0 | 3.36e-01 | 87.6% | 45.9% |
| 4c0nA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 39.0 | 3.30e-01 | 83.1% | 72.7% |
| 1lkoA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.50 | 43.0 | 3.72e-01 | 98.9% | 89.7% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5029573 | 3718.1.1.0 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT | 0.58 | 50.0 | 4.89e-01 | 98.9% | 100.0% |
| 3603443 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.58 | 45.0 | 3.59e-01 | 85.4% | 73.7% |
| None | — | 0.57 | 42.0 | 3.36e-01 | 78.7% | 84.4% | |
| 4945809 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.56 | 43.0 | 3.46e-01 | 82.0% | 91.2% |
| 4989664 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.55 | 40.0 | 3.22e-01 | 77.5% | 81.1% |
| 3727197 | 5069.1.1.7 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 | 0.53 | 46.0 | 3.77e-01 | 97.8% | 92.4% |
| 4530505 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.52 | 39.0 | 3.20e-01 | 78.7% | 89.1% |
| 1569535 | 191.1.1.26 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_24 | 0.51 | 38.0 | 3.52e-01 | 79.8% | 60.5% |
| 3386700 | 304.58.1.0 ↗ | a+b two layers › Alpha-beta plaits › FepE-like › FepE-like | 0.51 | 45.0 | 3.16e-01 | 100.0% | 48.5% |