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MH113814.1__AWD90721.1__X__00044
Bact-VirMH113814.1__AWD90721.1__X__00044
Identity
- Accession:
- MH113814 ↗
- Kingdom:
- phage
Quality
75.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autosignataviridae›
Nerthusvirus›
Pseudomonas_phage_Achelous
TaxID: 2163982
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-80
Domain cluster:
rep: MG004687.1__ATS93353.1__mutPK1A2_p54__00051__D23-76
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jiiA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.73 | 51.0 | 3.87e-01 | 74.5% | 37.3% |
| 1a3wB03 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.69 | 58.0 | 4.66e-01 | 97.9% | 74.2% |
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.68 | 54.0 | 5.16e-01 | 100.0% | 75.0% |
| 3fqmA01 | 2.20.25.210 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B | 0.64 | 46.0 | 4.27e-01 | 95.7% | 59.0% |
| 3aiiA02 | 2.40.240.100 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › | 0.64 | 53.0 | 4.93e-01 | 100.0% | 89.1% |
| 4mptA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 47.0 | 3.30e-01 | 83.0% | 26.5% |
| 4k4kA01 | 2.60.40.2620 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like | 0.62 | 54.0 | 3.94e-01 | 100.0% | 37.8% |
| 1tjyA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 49.0 | 3.50e-01 | 97.9% | 33.7% |
| 1z9fA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 38.0 | 3.16e-01 | 72.3% | 93.3% |
| 4tvcA01 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.56 | 46.0 | 3.20e-01 | 100.0% | 43.6% |
| 4n04A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.56 | 40.0 | 3.11e-01 | 78.7% | 81.1% |
| 2g3mA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.56 | 43.0 | 3.62e-01 | 89.4% | 77.5% |
| 5x6vG00 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.55 | 44.0 | 3.38e-01 | 100.0% | 50.0% |
| 2iz4A01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.55 | 43.0 | 4.34e-01 | 93.6% | 93.9% |
| 3jyyA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 41.0 | 3.05e-01 | 91.5% | 80.6% |
| 1a2pA00 | 3.10.450.30 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases | 0.52 | 43.0 | 3.35e-01 | 95.7% | 48.1% |
| 3bg1B01 | 6.20.50.170 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.52 | 34.0 | 3.38e-01 | 70.2% | 65.3% |
| 1nijA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 37.0 | 2.43e-01 | 87.2% | 18.4% |
| 2rbcA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 37.0 | 2.39e-01 | 85.1% | 45.1% |
| 6k5gA01 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.51 | 41.0 | 2.61e-01 | 93.6% | 66.9% |
| 1f44A01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.50 | 36.0 | 2.58e-01 | 85.1% | 66.5% |
| 1iktA00 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.50 | 39.0 | 3.19e-01 | 100.0% | 43.5% |
| 2jbvB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 37.0 | 2.61e-01 | 97.9% | 25.4% |
| 1g5hA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.50 | 39.0 | 2.54e-01 | 100.0% | 50.9% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5021656 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.70 | 58.0 | 5.76e-01 | 93.6% | 88.0% |
| 4962327 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.70 | 58.0 | 5.54e-01 | 93.6% | 83.6% |
| 4197640 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.70 | 51.0 | 4.47e-01 | 78.7% | 81.4% |
| 4158664 | 239.1.1.5 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C | 0.67 | 56.0 | 4.59e-01 | 97.9% | 83.3% |
| 3886071 | 391.1.2.11 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_2nd | 0.64 | 43.0 | 4.52e-01 | 95.7% | 82.5% |
| 3710465 | 239.1.1.6 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 | 0.64 | 54.0 | 3.86e-01 | 95.7% | 57.9% |
| 4947784 | 239.1.1.6 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 | 0.64 | 52.0 | 4.15e-01 | 95.7% | 79.0% |
| 4999166 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 54.0 | 4.66e-01 | 97.9% | 76.0% |
| 4059008 | 239.1.1.6 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 | 0.63 | 53.0 | 4.81e-01 | 97.9% | 90.8% |
| 3649906 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.60 | 46.0 | 3.68e-01 | 80.9% | 76.8% |
| 4009391 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 46.0 | 3.96e-01 | 89.4% | 91.3% |
| 3595436 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.59 | 42.0 | 3.17e-01 | 80.9% | 51.1% |
| 4941125 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 43.0 | 3.33e-01 | 83.0% | 72.2% |
| 3239313 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.58 | 49.0 | 3.01e-01 | 100.0% | 21.6% |
| 5021658 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.57 | 45.0 | 4.49e-01 | 93.6% | 88.0% |
| 5008233 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.57 | 46.0 | 4.13e-01 | 95.7% | 71.4% |
| 4287737 | 702.1.1.4 ↗ | beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack | 0.56 | 45.0 | 2.79e-01 | 95.7% | 19.4% |
| 4051792 | 702.1.1.4 ↗ | beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack | 0.56 | 45.0 | 3.59e-01 | 95.7% | 58.1% |
| 3476977 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.55 | 40.0 | 4.25e-01 | 78.7% | 92.5% |
| 4591362 | 702.1.1.4 ↗ | beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack | 0.55 | 46.0 | 3.12e-01 | 97.9% | 32.6% |
| 3700743 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.55 | 44.0 | 3.95e-01 | 91.5% | 61.4% |
| 3816821 | 210.1.2.8 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 | 0.54 | 44.0 | 2.89e-01 | 100.0% | 19.6% |
| 3707684 | 243.11.1.0 ↗ | a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein | 0.54 | 44.0 | 3.98e-01 | 91.5% | 66.2% |
| 4482129 | 223.1.1.84 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PHY+GAF | 0.54 | 41.0 | 2.74e-01 | 93.6% | 55.3% |
| 3604147 | 873.1.1.9 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R,DUF2507 | 0.51 | 39.0 | 3.08e-01 | 100.0% | 57.9% |
| 3523715 | 11.1.1.550 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_3 | 0.51 | 36.0 | 2.84e-01 | 78.7% | 49.6% |
| 5038519 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.51 | 36.0 | 2.86e-01 | 80.9% | 71.3% |
| 5015046 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 36.0 | 3.07e-01 | 78.7% | 94.1% |
D2
high
residues 131-217
Domain cluster:
rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6o38A04 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 67.0 | 6.65e-01 | 100.0% | 96.6% |
| 4dnyA00 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.72 | 65.0 | 6.03e-01 | 100.0% | 88.1% |
| 6o38A02 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.71 | 63.0 | 6.19e-01 | 98.9% | 98.9% |
| 8db3B02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 45.0 | 3.44e-01 | 71.3% | 54.3% |
| 1hf2A02 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.60 | 48.0 | 4.59e-01 | 100.0% | 74.5% |
| 1k4zA00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.54 | 47.0 | 3.92e-01 | 97.7% | 60.5% |
| 4jcqA00 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.53 | 45.0 | 3.68e-01 | 95.4% | 73.5% |
| 1srqC02 | 3.40.50.11210 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Rap/Ran-GAP | 0.50 | 41.0 | 3.35e-01 | 94.3% | 96.2% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5067718 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.67 | 46.0 | 3.45e-01 | 71.3% | 56.4% |
| 4992367 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.66 | 44.0 | 3.26e-01 | 70.1% | 60.4% |
| 5032659 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.65 | 46.0 | 3.28e-01 | 73.6% | 55.7% |
| 4976926 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.64 | 46.0 | 3.35e-01 | 74.7% | 59.2% |
| 5031877 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.63 | 43.0 | 3.25e-01 | 71.3% | 55.6% |
| 5057343 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.61 | 42.0 | 3.15e-01 | 72.4% | 54.8% |
| 3165270 | 207.2.1.10 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pertactin | 0.59 | 50.0 | 3.62e-01 | 94.3% | 40.0% |
| 2526446 | 1160.1.1.1 ↗ | beta duplicates or obligate multimers › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain › TGFBR3_N | 0.58 | 45.0 | 3.62e-01 | 83.9% | 42.4% |
| 4649902 | 207.2.1.78 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pertactin, AIDA | 0.58 | 51.0 | 3.12e-01 | 100.0% | 16.9% |
| 5069956 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.57 | 39.0 | 2.89e-01 | 72.4% | 49.6% |
| 5008124 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.57 | 47.0 | 3.57e-01 | 93.1% | 55.0% |
| 5027695 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.56 | 48.0 | 3.49e-01 | 93.1% | 54.3% |
| 4975916 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.55 | 47.0 | 3.41e-01 | 93.1% | 56.2% |
| 5045504 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.55 | 46.0 | 3.40e-01 | 93.1% | 55.8% |
| 5027855 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.55 | 46.0 | 3.33e-01 | 93.1% | 48.2% |
| 5055709 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.55 | 46.0 | 3.44e-01 | 93.1% | 53.3% |
| 4172626 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.55 | 46.0 | 3.24e-01 | 93.1% | 47.9% |
| 5071494 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.55 | 46.0 | 3.37e-01 | 93.1% | 52.8% |
| 5037453 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.55 | 46.0 | 3.39e-01 | 93.1% | 57.0% |
| 2775473 | 12.6.1.6 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_95_C | 0.54 | 46.0 | 4.65e-01 | 95.4% | 100.0% |
| 4824961 | 1033.1.1.1 ↗ | beta duplicates or obligate multimers › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › TcdA_TcdB_pore | 0.53 | 46.0 | 3.76e-01 | 100.0% | 59.6% |
| 5056293 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.53 | 39.0 | 2.98e-01 | 79.3% | 51.1% |
| 5027315 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.53 | 39.0 | 2.87e-01 | 79.3% | 41.6% |
| 5013012 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.53 | 44.0 | 3.27e-01 | 93.1% | 52.8% |
| 5028594 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.52 | 44.0 | 3.32e-01 | 93.1% | 54.1% |
| 3326535 | 207.1.1.143 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14, LRR_R13L1-DRL21 | 0.52 | 45.0 | 3.32e-01 | 98.9% | 38.0% |
| 3736031 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.52 | 43.0 | 2.97e-01 | 94.3% | 52.2% |
| 4977382 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.50 | 37.0 | 2.78e-01 | 79.3% | 44.7% |
| 4995274 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.50 | 42.0 | 3.15e-01 | 94.3% | 55.2% |