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MH133207.1__AWD93205.1__AB9_096__00096

Bact-Vir

MH133207.1__AWD93205.1__AB9_096__00096

Identity

Accession:
MH133207 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 52-69_116-245
PDB
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zdbA01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.83 78.0 7.64e-01 99.3% 92.4%
1xo1A02 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.81 69.0 6.73e-01 100.0% 82.4%
1tfrA01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.78 72.0 6.39e-01 99.3% 76.7%
1cmwA01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.67 59.0 5.88e-01 92.6% 94.0%
1j24A00 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 39.0 4.12e-01 79.1% 69.2%
1dnpA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.62 51.0 5.43e-01 95.3% 100.0%
2h0rA00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.62 55.0 4.86e-01 98.0% 99.5%
2iyeA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.60 47.0 4.69e-01 98.0% 78.3%
3nwoA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 45.0 3.58e-01 79.7% 90.3%
3qyfA01 3.40.50.10770 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein VC1899 like domain (Restriction endonuclease-like) 0.59 54.0 5.24e-01 100.0% 95.8%
3pl1A00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.59 52.0 4.87e-01 98.0% 98.9%
4wnyA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 47.0 4.95e-01 94.6% 95.5%
3irvA01 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.58 52.0 4.67e-01 98.6% 91.2%
1im5A00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.57 51.0 4.82e-01 98.6% 97.8%
2z3vA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 49.0 5.06e-01 94.6% 98.5%
1zmbA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.56 42.0 3.54e-01 77.7% 46.2%
4q7qB00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.55 42.0 3.51e-01 79.7% 73.9%
1mjhB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 47.0 4.85e-01 95.3% 95.8%
5uivA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 41.0 3.63e-01 80.4% 94.7%
2gm3A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 47.0 4.73e-01 95.3% 91.5%
3olqA00 3.40.50.12370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 50.0 3.90e-01 100.0% 96.7%
2dumC00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 47.0 4.78e-01 94.6% 94.5%
4eogA01 3.40.50.10640 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like 0.54 49.0 3.92e-01 100.0% 75.2%
3idfA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 46.0 4.80e-01 94.6% 99.3%
6g80B01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 48.0 4.19e-01 100.0% 78.3%
4gp6A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 39.0 3.78e-01 79.1% 95.3%
1gkkA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 38.0 3.12e-01 77.7% 80.9%
3fg9C01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 45.0 4.66e-01 94.6% 100.0%
4s2rP02 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.51 42.0 4.19e-01 89.2% 91.8%
3kxpA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 38.0 3.21e-01 78.4% 91.8%
4y9tA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 43.0 4.08e-01 91.2% 77.3%
2ox6D00 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.51 35.0 3.41e-01 76.4% 62.7%
4nesA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 45.0 4.13e-01 98.0% 98.5%
7paxA01 3.40.1180.10 Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like 0.50 45.0 3.76e-01 100.0% 86.0%
4cvnA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 37.0 3.55e-01 77.7% 86.6%
3a4lB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 39.0 3.66e-01 81.1% 94.4%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4322588 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.84 80.0 7.42e-01 99.3% 89.4%
4031881 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.84 80.0 7.54e-01 100.0% 92.6%
4040391 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.84 80.0 7.42e-01 100.0% 94.4%
4029535 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.84 80.0 7.38e-01 100.0% 93.9%
4157264 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.83 79.0 7.33e-01 100.0% 92.2%
3831671 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.83 79.0 7.12e-01 100.0% 94.9%
3261281 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.83 79.0 7.51e-01 100.0% 92.9%
4324598 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.83 79.0 7.23e-01 100.0% 83.2%
3964138 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.83 78.0 7.27e-01 100.0% 86.7%
4355422 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.83 78.0 7.35e-01 99.3% 85.7%
3293941 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.83 79.0 6.86e-01 100.0% 87.6%
4031817 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.82 78.0 7.37e-01 100.0% 93.5%
3942445 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.82 78.0 7.11e-01 99.3% 80.0%
4995752 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.82 78.0 7.48e-01 100.0% 95.2%
3969358 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.81 75.0 7.34e-01 99.3% 96.2%
4125023 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.80 76.0 7.19e-01 100.0% 93.5%
3329169 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.75 70.0 6.58e-01 100.0% 90.9%
3739745 2006.1.4.20 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I_2 0.74 70.0 5.65e-01 100.0% 60.4%
3882124 2006.1.4.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.70 65.0 5.71e-01 100.0% 71.6%
3781390 2006.1.4.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.68 64.0 5.54e-01 100.0% 81.9%
4968858 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.58 50.0 5.10e-01 95.3% 92.4%
1406486 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.58 47.0 4.95e-01 94.6% 95.5%
5083153 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.58 49.0 5.17e-01 94.6% 98.5%
3327087 2007.5.1.1 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.57 43.0 3.74e-01 79.7% 64.3%
4983835 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.57 49.0 5.10e-01 94.6% 100.0%
4014185 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 43.0 3.96e-01 79.1% 97.4%
3670671 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.56 46.0 4.73e-01 95.3% 89.0%
3256073 2007.15.1.6 a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › DUF4062 0.56 43.0 3.89e-01 79.7% 98.5%
4988567 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.56 48.0 4.87e-01 93.9% 92.4%
4985983 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.56 49.0 5.05e-01 94.6% 98.6%
3671086 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.56 42.0 3.81e-01 79.7% 69.5%
4953413 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.56 49.0 5.05e-01 94.6% 98.6%
4971716 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.56 48.0 4.93e-01 94.6% 95.8%
3288720 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.56 48.0 5.00e-01 95.3% 97.9%
3603346 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.55 49.0 4.77e-01 94.6% 86.9%
3344156 2008.1.1.7 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.55 40.0 3.64e-01 79.1% 56.4%
3829765 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.55 51.0 5.00e-01 100.0% 98.8%
5025252 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.55 49.0 5.01e-01 93.9% 100.0%
3308798 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.55 49.0 4.86e-01 95.3% 92.3%
5048111 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.55 48.0 4.85e-01 94.6% 93.3%
2628063 2007.5.1.1 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.55 41.0 3.35e-01 79.1% 58.9%
4963948 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.55 48.0 4.86e-01 94.6% 95.2%
5074975 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.55 48.0 4.96e-01 94.6% 98.6%
4959799 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.55 48.0 4.88e-01 94.6% 94.6%
3643612 2006.1.1.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.54 49.0 4.37e-01 98.0% 99.0%
4944110 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.54 47.0 4.87e-01 94.6% 97.9%
5039931 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.54 48.0 4.38e-01 94.6% 73.2%
4972761 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 41.0 3.55e-01 79.7% 96.6%
3837240 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.54 50.0 4.71e-01 100.0% 88.0%
3803150 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.54 49.0 4.53e-01 98.0% 79.5%
3653986 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.54 49.0 4.73e-01 100.0% 95.3%
3806511 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.54 47.0 4.87e-01 93.9% 100.0%
4935646 2004.1.1.192 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.54 41.0 3.81e-01 79.7% 97.9%
3839224 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.54 46.0 4.80e-01 93.9% 100.0%
3610726 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.53 48.0 4.03e-01 98.0% 87.6%
5008418 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.53 47.0 4.80e-01 94.6% 96.6%
3412990 2006.1.1.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.53 48.0 4.22e-01 98.0% 95.8%
4271713 7574.1.1.7 a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › TPP_enzyme_N 0.53 43.0 3.83e-01 87.8% 76.7%
3320604 2005.1.1.43 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_2nd 0.53 46.0 4.36e-01 94.6% 92.8%
3834277 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.53 48.0 4.52e-01 100.0% 87.4%
3973037 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.52 46.0 4.70e-01 94.6% 97.9%
4600611 2005.1.1.23 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA_Me_trans 0.52 46.0 4.12e-01 96.6% 84.8%
3103201 2003.1.9.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF+UBA_E1_SCCH 0.52 47.0 3.23e-01 100.0% 28.8%
4034049 2003.1.9.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.52 44.0 3.71e-01 100.0% 53.5%
3741630 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.51 45.0 4.29e-01 93.9% 98.2%
4024569 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.51 46.0 4.06e-01 97.3% 94.4%
3728322 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.51 46.0 3.08e-01 98.0% 31.5%
2141797 7534.1.1.1 a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf 0.51 46.0 4.08e-01 100.0% 97.2%
3701989 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.51 44.0 3.54e-01 94.6% 51.7%
3626470 2003.1.1.72 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd 0.51 38.0 3.02e-01 79.1% 49.5%
4484929 323.1.1.23 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › LuxE 0.50 43.0 3.31e-01 92.6% 54.4%
4134494 2004.1.1.192 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.50 37.0 3.47e-01 77.7% 83.6%
2484910 2003.4.1.1 a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.50 40.0 3.75e-01 85.8% 75.8%
D2 high residues 249-393
PDB
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kjwA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.62 32.0 3.82e-01 97.9% 72.9%
1c7uA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.57 18.0 2.74e-01 99.3% 63.5%
4rr5A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.55 23.0 3.30e-01 75.9% 85.9%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 20.0 2.80e-01 82.1% 69.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033043 616.1.1.41 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Terminase_4 0.62 28.0 3.46e-01 100.0% 66.7%
3595010 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 29.0 3.46e-01 98.6% 74.0%
3611229 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 36.0 3.03e-01 95.2% 37.6%
5000320 152.1.1.1 alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 0.52 28.0 3.49e-01 97.9% 89.2%
3426143 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.51 31.0 3.48e-01 91.7% 75.7%