Back to structures

MH133207.1__AWD93221.1__AB9_155__00155

Bact-Vir

MH133207.1__AWD93221.1__AB9_155__00155

Identity

Accession:
MH133207 ↗
Kingdom:
phage

Quality

82.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-92
PDB
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.78 64.0 6.34e-01 95.3% 83.1%
4jklA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 37.0 3.64e-01 74.1% 50.5%
3gf8A01 2.60.40.2100 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 43.0 3.46e-01 91.8% 38.0%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.62 44.0 4.66e-01 81.2% 84.2%
3nqhA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 39.0 3.34e-01 72.9% 40.4%
3payC01 2.60.40.2100 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 45.0 3.51e-01 91.8% 37.9%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 36.0 4.08e-01 74.1% 80.6%
3r4rA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 47.0 3.91e-01 90.6% 49.7%
4ypjA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 3.50e-01 74.1% 52.1%
2pnqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.56 45.0 2.95e-01 89.4% 85.1%
2xwxA03 2.60.40.2550 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 34.0 3.31e-01 74.1% 53.1%
4p0dA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.61e-01 76.5% 60.0%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.51e-01 75.3% 55.9%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.48e-01 74.1% 56.0%
2mm0A00 2.10.70.110 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.53 38.0 4.31e-01 75.3% 100.0%
2abqA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 40.0 2.84e-01 84.7% 68.5%
3of1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 35.0 3.13e-01 75.3% 93.2%
5uh0A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 41.0 3.57e-01 92.9% 73.6%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4236834 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.83 70.0 7.09e-01 97.6% 90.6%
3215217 821.1.1.7 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG 0.81 75.0 5.90e-01 98.8% 66.1%
4974405 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.81 71.0 6.94e-01 100.0% 87.8%
4947741 821.1.1.17 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 0.81 67.0 6.79e-01 95.3% 88.2%
4310838 821.1.1.9 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.81 69.0 6.91e-01 98.8% 90.6%
4054044 821.1.1.9 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.79 73.0 6.91e-01 98.8% 87.0%
4945828 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.79 69.0 6.80e-01 97.6% 88.9%
3505268 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.78 72.0 6.08e-01 98.8% 85.9%
4170310 821.1.1.9 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.78 67.0 6.59e-01 95.3% 86.7%
3588392 821.1.1.9 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.77 69.0 6.53e-01 97.6% 82.0%
5030770 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.74 64.0 6.14e-01 96.5% 82.1%
4964967 102.2.1.3 alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.74 43.0 3.63e-01 89.4% 35.7%
3798089 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.61 35.0 3.33e-01 83.5% 44.8%
3925735 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.60 37.0 3.52e-01 88.2% 50.5%
3525486 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.54 48.0 3.51e-01 100.0% 89.1%
4942962 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 3.52e-01 78.8% 56.5%
3453747 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 35.0 2.60e-01 71.8% 37.9%
D2 high residues 107-168
PDB
D3 high residues 172-243
PDB
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.69 61.0 5.91e-01 98.6% 95.0%
4bd9B01 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.66 30.0 3.39e-01 84.7% 51.9%
2x8xX01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.64 43.0 4.25e-01 93.1% 65.8%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 53.0 4.72e-01 100.0% 69.9%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 4.42e-01 100.0% 69.8%
2x8xX03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.57 39.0 3.82e-01 95.8% 62.7%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.55 42.0 3.58e-01 93.1% 48.0%
3cueB00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.55 43.0 3.36e-01 87.5% 76.6%
1t6sB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 4.26e-01 100.0% 85.7%
3c18A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 4.35e-01 83.3% 100.0%
2qy6A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 41.0 2.92e-01 83.3% 53.6%
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.54 39.0 3.84e-01 97.2% 70.7%
6eudA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 41.0 3.20e-01 84.7% 85.9%
3og5A01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.53 41.0 3.97e-01 97.2% 72.9%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 3.91e-01 100.0% 67.8%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 45.0 4.37e-01 100.0% 86.6%
1j1fA00 3.90.730.10 Alpha Beta › Alpha-Beta Complex › Ribonuclease Rh; Chain A › Ribonuclease T2-like 0.53 45.0 3.33e-01 95.8% 42.9%
4oo1I01 2.40.50.880 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 38.0 3.84e-01 94.4% 80.0%
4kt5C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 4.18e-01 100.0% 83.0%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3488752 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.66 58.0 3.94e-01 100.0% 62.5%
5050784 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 56.0 5.26e-01 100.0% 87.8%
3238923 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.63 53.0 3.24e-01 98.6% 15.0%
4278077 304.158.1.1 a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Csy2 0.63 43.0 2.83e-01 70.8% 37.6%
5027506 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 55.0 5.27e-01 100.0% 87.1%
3468397 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.62 52.0 4.53e-01 100.0% 80.8%
3797519 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 53.0 3.17e-01 100.0% 14.1%
4929238 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.61 41.0 4.12e-01 83.3% 68.0%
3334401 101.1.2.566 alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C 0.60 53.0 3.63e-01 100.0% 27.1%
5032906 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.60 52.0 4.24e-01 100.0% 58.6%
3371797 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.59 45.0 4.22e-01 84.7% 66.7%
2391543 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 50.0 3.79e-01 100.0% 38.6%
3343334 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.59 50.0 4.11e-01 100.0% 53.8%
3665317 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.59 50.0 4.19e-01 100.0% 57.0%
3714221 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 48.0 4.71e-01 100.0% 87.5%
3355197 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 51.0 4.58e-01 100.0% 83.0%
3670739 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.57 48.0 3.86e-01 100.0% 48.1%
3481547 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.57 48.0 3.94e-01 100.0% 63.3%
5052491 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.57 48.0 3.67e-01 100.0% 44.7%
3656807 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 41.0 3.89e-01 79.2% 81.1%
3667109 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.56 48.0 4.10e-01 100.0% 75.2%
4997255 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 48.0 4.37e-01 100.0% 79.0%
5082509 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.56 47.0 3.93e-01 97.2% 56.9%
3215999 5001.1.1.111 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.55 42.0 2.69e-01 84.7% 48.1%
3883169 5001.1.1.3 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 0.55 40.0 2.74e-01 77.8% 91.5%
4936984 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 45.0 3.98e-01 98.6% 66.9%
5057098 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 46.0 3.74e-01 100.0% 50.3%
3586609 101.1.2.278 alpha arrays › HTH › HTH › winged helix domain › CNDH2_C 0.54 46.0 4.00e-01 100.0% 62.2%
4965714 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.54 45.0 4.22e-01 100.0% 76.7%
4985036 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.54 44.0 3.41e-01 100.0% 39.4%
4403519 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 45.0 3.50e-01 100.0% 41.8%
3171046 320.4.1.0 a+b two layers › R3H domain-like › PUB domain › PUB domain 0.53 45.0 3.52e-01 100.0% 65.7%
3619358 5001.1.1.111 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.53 38.0 2.48e-01 77.8% 65.6%
4989899 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.53 40.0 2.73e-01 83.3% 66.8%
5075111 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.53 43.0 3.53e-01 100.0% 47.2%
3933688 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 38.0 2.47e-01 77.8% 65.2%
5051542 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 39.0 2.99e-01 83.3% 70.5%
4401786 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.52 43.0 3.92e-01 100.0% 66.7%
5039984 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.52 44.0 3.47e-01 100.0% 43.0%
1107232 101.1.2.84 alpha arrays › HTH › HTH › winged helix domain › CaiF_GrlA 0.52 44.0 4.18e-01 100.0% 83.0%
4029392 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.52 44.0 3.36e-01 100.0% 39.5%
4995231 101.1.2.914 alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.51 42.0 3.96e-01 100.0% 75.6%
3938245 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.51 43.0 3.21e-01 100.0% 35.0%
4947925 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 3.40e-01 100.0% 42.9%
4413612 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.51 43.0 3.75e-01 100.0% 70.8%
4467359 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.51 43.0 3.39e-01 100.0% 49.4%
4382858 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 39.0 2.42e-01 88.9% 18.2%