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MH133207.1__AWD93307.1__AB9_143__00143

Bact-Vir

MH133207.1__AWD93307.1__AB9_143__00143

Identity

Accession:
MH133207 ↗
Kingdom:
phage

Quality

87.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-61
PDB
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.69 52.0 4.13e-01 81.7% 84.2%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 45.0 3.97e-01 88.3% 47.7%
3l2pA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.66 47.0 4.48e-01 76.7% 73.2%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.65 49.0 3.98e-01 81.7% 62.1%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 48.0 4.42e-01 80.0% 65.8%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.64 43.0 4.56e-01 70.0% 88.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.64 52.0 3.85e-01 93.3% 93.4%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.64 42.0 3.55e-01 70.0% 42.2%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 47.0 4.04e-01 81.7% 67.3%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.62 54.0 4.86e-01 100.0% 69.8%
3bn6A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 42.0 3.10e-01 70.0% 55.1%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.62 47.0 3.75e-01 81.7% 59.8%
4limA00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.62 48.0 2.99e-01 86.7% 74.5%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.61 41.0 3.43e-01 70.0% 41.8%
1pqsA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 39.0 3.62e-01 70.0% 49.4%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.61 36.0 3.75e-01 70.0% 59.6%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.61 40.0 4.02e-01 70.0% 66.1%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.61 48.0 4.32e-01 93.3% 95.7%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.60 43.0 4.06e-01 78.3% 76.3%
1j3qB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 52.0 3.70e-01 100.0% 42.6%
3liuA01 2.60.40.3160 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 45.0 3.58e-01 81.7% 61.0%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 44.0 3.29e-01 81.7% 76.3%
2mcaA00 2.60.40.2890 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF5300 0.59 44.0 3.70e-01 81.7% 51.5%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 43.0 4.02e-01 81.7% 98.7%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 42.0 3.23e-01 76.7% 67.2%
2orzA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 39.0 2.95e-01 70.0% 56.5%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 39.0 3.78e-01 70.0% 76.5%
2h5eA03 3.30.70.3280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III 0.56 44.0 3.49e-01 90.0% 81.8%
2vfrA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.56 37.0 2.91e-01 70.0% 30.8%
1x9nA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.56 41.0 3.74e-01 78.3% 70.2%
4bwsF00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.56 40.0 3.92e-01 78.3% 79.1%
2z86D02 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 42.0 2.82e-01 83.3% 93.1%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.56 39.0 3.96e-01 76.7% 82.0%
2bkfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 41.0 3.76e-01 83.3% 96.4%
1xe7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 47.0 3.38e-01 100.0% 47.3%
2jz6A01 2.30.170.40 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 0.54 33.0 3.48e-01 71.7% 68.0%
3d8kD00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 44.0 2.85e-01 100.0% 75.4%
2isnB00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 44.0 2.90e-01 100.0% 82.4%
4yzgA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 42.0 2.88e-01 100.0% 89.1%
3vx8A01 3.40.140.100 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain 0.53 37.0 2.97e-01 76.7% 83.7%
1r4kA01 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.53 35.0 2.79e-01 70.0% 63.6%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.53e-01 100.0% 99.3%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 39.0 2.86e-01 81.7% 59.6%
3cw3A00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.51 39.0 3.40e-01 81.7% 67.7%
6pxyA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 39.0 3.25e-01 86.7% 83.8%
3v67A01 3.30.450.210 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Two-component sensor protein CpxA, periplasmic domain 0.51 39.0 3.23e-01 86.7% 77.7%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.51 37.0 3.01e-01 83.3% 79.3%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.28e-01 93.3% 99.3%
4nlcA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 41.0 2.86e-01 100.0% 43.5%
4q0jA03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.50 38.0 3.02e-01 86.7% 92.3%
4fixA01 3.90.550.60 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › 0.50 41.0 2.57e-01 96.7% 60.3%
4kr6A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.50 39.0 2.94e-01 90.0% 96.5%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4931923 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.83 56.0 5.04e-01 70.0% 86.3%
3475431 133.1.1.0 alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) 0.75 54.0 3.56e-01 76.7% 53.8%
3281602 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.73 48.0 5.23e-01 70.0% 85.4%
3729195 224.1.1.0 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.72 62.0 4.97e-01 100.0% 60.0%
5051316 224.1.1.0 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.71 63.0 5.22e-01 100.0% 61.0%
4963 4012.1.1.1 a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase › TOPRIM_C 0.70 44.0 4.97e-01 70.0% 88.4%
3687025 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.70 60.0 4.81e-01 100.0% 57.6%
4961283 101.1.2.935 alpha arrays › HTH › HTH › winged helix domain › HVO_B0008_C 0.65 47.0 3.92e-01 78.3% 77.1%
4358932 304.24.1.4 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C 0.64 51.0 3.94e-01 88.3% 84.4%
4961379 4176.1.1.2 a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.64 43.0 2.99e-01 71.7% 20.9%
4959407 304.163.1.3 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 0.63 42.0 4.45e-01 70.0% 82.0%
4488855 275.1.1.5 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › Arc_PepC 0.63 54.0 4.84e-01 100.0% 68.2%
3174696 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.62 41.0 2.97e-01 70.0% 97.4%
3959955 304.163.1.3 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 0.62 41.0 4.52e-01 70.0% 93.3%
3898349 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.61 52.0 3.47e-01 95.0% 46.8%
3721040 4176.1.1.2 a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.61 41.0 2.82e-01 71.7% 18.8%
4188115 109.4.1.1310 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TRIP12_N 0.61 44.0 2.49e-01 80.0% 9.7%
3700302 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.61 41.0 3.16e-01 71.7% 33.8%
3332111 7590.1.1.2 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi 0.60 43.0 3.02e-01 76.7% 68.5%
3805835 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.60 51.0 3.32e-01 95.0% 39.2%
3617588 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.59 51.0 4.42e-01 100.0% 61.1%
3368299 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.59 51.0 3.25e-01 95.0% 47.9%
3586250 822.1.1.1 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.59 42.0 4.21e-01 78.3% 85.0%
3801221 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.59 50.0 4.34e-01 100.0% 61.1%
3937995 223.1.1.138 a+b three layers › Profilin-like › sensor domains › sensor domains › VWA_N, VGCC_alpha2 0.58 45.0 2.59e-01 86.7% 26.6%
4870707 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.58 49.0 3.31e-01 95.0% 44.0%
3227231 822.1.1.1 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.58 41.0 4.13e-01 78.3% 77.8%
3296049 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.58 48.0 3.26e-01 93.3% 50.9%
3766042 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.58 44.0 3.64e-01 83.3% 77.3%
3574017 822.1.1.2 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.56 40.0 3.90e-01 78.3% 70.0%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.56 38.0 3.97e-01 70.0% 88.0%
4489784 241.12.1.1 a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like › DUF1054 0.56 38.0 2.72e-01 71.7% 32.5%
3513222 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.56 45.0 2.86e-01 100.0% 55.8%
3501103 822.1.1.1 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.55 40.0 4.05e-01 81.7% 84.1%
3668025 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.55 46.0 3.05e-01 100.0% 86.2%
4947457 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.55 47.0 2.99e-01 96.7% 41.9%
3988557 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.54 45.0 3.02e-01 96.7% 43.3%
5001166 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.54 36.0 2.88e-01 70.0% 31.1%
3264069 822.1.1.2 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.54 41.0 4.13e-01 86.7% 95.0%
3788967 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.53 43.0 2.89e-01 100.0% 83.7%
3284239 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.53 40.0 3.01e-01 88.3% 63.9%
4952012 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 40.0 2.65e-01 88.3% 65.9%
4928815 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 38.0 3.80e-01 93.3% 73.8%
3790561 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.53 42.0 2.91e-01 100.0% 84.9%
4158495 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.53 45.0 4.03e-01 100.0% 84.4%
3523591 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 39.0 3.34e-01 81.7% 85.0%
1514578 10.32.1.6 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein 0.52 39.0 2.84e-01 81.7% 57.6%