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MH133207.1__AWD93337.1__AB9_162__00162

Bact-Vir

MH133207.1__AWD93337.1__AB9_162__00162

Identity

Accession:
MH133207 ↗
Kingdom:
phage

Quality

76.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-59
PDB
Domain cluster: representative
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jheA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.83 73.0 6.02e-01 97.9% 87.7%
6lxgA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.82 70.0 6.00e-01 93.6% 100.0%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.80 71.0 5.97e-01 100.0% 94.9%
4n8nA00 3.30.70.3040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.79 68.0 5.24e-01 95.7% 98.0%
3h20A02 3.30.70.1790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RepB DNA-primase, N-terminal domain 0.68 56.0 4.50e-01 97.9% 68.9%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.67 54.0 5.38e-01 100.0% 90.0%
2cuwA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.67 56.0 4.82e-01 100.0% 96.4%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.67 59.0 4.40e-01 100.0% 79.2%
1mw7A02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.67 53.0 4.52e-01 97.9% 51.7%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.67 50.0 3.57e-01 85.1% 37.9%
3lgdA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.66 45.0 2.63e-01 100.0% 7.3%
4q0jA03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.66 49.0 3.58e-01 85.1% 40.8%
1e3hA03 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.66 48.0 3.14e-01 78.7% 19.7%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 55.0 4.67e-01 97.9% 100.0%
2a8eA00 3.30.930.20 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Protein of unknown function DUF1054 0.65 49.0 3.25e-01 85.1% 94.8%
7y8sB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 52.0 4.34e-01 100.0% 51.2%
4ccjA01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.64 49.0 3.13e-01 100.0% 17.1%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.64 50.0 3.64e-01 100.0% 46.1%
3myxB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 45.0 3.38e-01 100.0% 29.5%
1o5uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 45.0 3.70e-01 100.0% 40.9%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 45.0 3.47e-01 100.0% 34.6%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.63 55.0 4.25e-01 100.0% 54.1%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.62 54.0 4.34e-01 100.0% 56.2%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.61 51.0 3.82e-01 100.0% 40.5%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.61 53.0 4.11e-01 100.0% 46.8%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.61 51.0 3.93e-01 100.0% 52.1%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.61 50.0 4.15e-01 100.0% 60.2%
3es1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 44.0 3.22e-01 100.0% 29.4%
3pbkA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.60 48.0 3.84e-01 93.6% 46.3%
3szpB02 3.40.190.290 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › 0.59 48.0 3.22e-01 93.6% 33.7%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 48.0 3.78e-01 97.9% 76.9%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 49.0 3.72e-01 100.0% 46.0%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 49.0 4.15e-01 100.0% 55.7%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 48.0 4.05e-01 100.0% 56.5%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.59 44.0 3.39e-01 80.9% 79.6%
3dkxA01 3.40.1310.30 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.58 45.0 3.50e-01 100.0% 63.4%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 45.0 4.06e-01 100.0% 71.1%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 51.0 4.88e-01 100.0% 96.4%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 44.0 4.02e-01 100.0% 68.4%
2mj6A00 3.30.450.250 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 45.0 3.64e-01 100.0% 45.6%
4geqB00 3.30.160.430 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 40.0 3.78e-01 76.6% 62.1%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 49.0 4.63e-01 100.0% 91.4%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 50.0 3.51e-01 100.0% 36.6%
2qejD01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 45.0 3.55e-01 97.9% 76.3%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 48.0 3.80e-01 100.0% 48.0%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 50.0 4.43e-01 100.0% 72.7%
1et9A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 46.0 3.62e-01 97.9% 90.0%
2pstX00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.53 43.0 3.97e-01 89.4% 80.3%
4gr5C01 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.53 41.0 3.82e-01 89.4% 75.0%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 46.0 3.42e-01 100.0% 53.6%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 47.0 4.18e-01 97.9% 74.2%
5ck3C00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 40.0 3.21e-01 87.2% 76.2%
4it4E01 2.40.30.320 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.52 37.0 3.01e-01 83.0% 83.3%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 43.0 3.57e-01 95.7% 64.3%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.52 41.0 3.73e-01 89.4% 72.7%
1b1zA02 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 41.0 3.19e-01 100.0% 72.8%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 42.0 3.40e-01 100.0% 61.5%
2yvsA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 43.0 3.35e-01 100.0% 42.1%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.51 42.0 3.70e-01 100.0% 60.5%
3pm9A02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 43.0 3.24e-01 100.0% 86.1%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3591023 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.86 74.0 6.15e-01 95.7% 91.3%
3387152 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.86 74.0 5.79e-01 95.7% 96.8%
3164326 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.84 72.0 6.19e-01 95.7% 100.0%
3968877 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.83 74.0 6.26e-01 97.9% 93.3%
3916419 304.4.1.66 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › S8_pro-domain 0.83 73.0 6.12e-01 100.0% 93.8%
4263573 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.83 71.0 5.98e-01 93.6% 97.3%
4576030 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.83 74.0 6.16e-01 100.0% 90.0%
3967528 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.82 72.0 6.15e-01 97.9% 97.3%
4512374 304.8.1.22 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT 0.82 74.0 6.01e-01 100.0% 90.6%
3942221 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.82 72.0 6.11e-01 97.9% 94.7%
4006107 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.82 71.0 6.10e-01 97.9% 94.7%
4214077 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.81 73.0 6.19e-01 100.0% 100.0%
3859647 304.163.1.1 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.80 68.0 5.98e-01 95.7% 100.0%
4979747 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.77 67.0 5.91e-01 100.0% 98.6%
3639608 304.4.1.53 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › R1_ABCA1 0.76 61.0 5.35e-01 93.6% 100.0%
3998137 304.7.1.4 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › S8_pro-domain 0.76 66.0 5.59e-01 100.0% 88.7%
4994799 304.16.1.1 a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.76 65.0 5.47e-01 97.9% 96.2%
5025089 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.76 65.0 5.78e-01 100.0% 97.1%
4991070 304.8.1.43 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_5 0.75 60.0 5.31e-01 91.5% 100.0%
5030904 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.74 61.0 5.41e-01 95.7% 97.1%
5071068 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.74 61.0 5.41e-01 95.7% 97.1%
4977774 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.73 60.0 5.38e-01 97.9% 98.6%
5062146 304.16.1.1 a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.72 59.0 5.01e-01 97.9% 95.2%
4953653 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.69 58.0 5.06e-01 97.9% 100.0%
3285401 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.67 58.0 5.05e-01 100.0% 64.0%
5747 4007.1.1.1 a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg 0.67 53.0 5.17e-01 97.9% 83.3%
4943828 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 52.0 4.22e-01 100.0% 46.6%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.65 51.0 5.16e-01 100.0% 93.3%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.65 50.0 5.10e-01 100.0% 93.3%
4007508 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.64 48.0 4.83e-01 100.0% 82.0%
3939821 10.12.1.40 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 0.64 48.0 2.93e-01 100.0% 11.8%
4177440 10.12.1.40 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 0.64 49.0 2.94e-01 100.0% 11.8%
3968122 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.64 47.0 4.81e-01 100.0% 91.1%
4939155 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.64 56.0 4.19e-01 100.0% 46.2%
3645596 109.4.1.1476 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, E_motif 0.63 45.0 2.57e-01 76.6% 7.9%
3573883 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.63 56.0 4.11e-01 100.0% 47.2%
3390562 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.62 51.0 4.57e-01 97.9% 67.1%
4327417 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.62 54.0 4.12e-01 100.0% 48.7%
4995671 3115.1.1.12 a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.62 47.0 4.66e-01 100.0% 86.0%
3958896 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.62 50.0 4.74e-01 97.9% 96.7%
4009311 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.62 48.0 4.47e-01 100.0% 67.7%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.57 44.0 4.40e-01 100.0% 96.0%
3646564 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.55 47.0 2.69e-01 97.9% 11.8%
3832603 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.54 45.0 2.49e-01 97.9% 9.2%
3804154 109.4.1.1383 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.54 45.0 2.71e-01 97.9% 20.3%
3958601 217.1.1.2 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.53 44.0 3.58e-01 100.0% 47.0%
4970434 217.1.1.2 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.53 44.0 3.68e-01 100.0% 53.3%
3802249 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.53 43.0 2.50e-01 100.0% 16.9%
3651007 109.4.1.1285 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.53 44.0 2.46e-01 97.9% 10.3%
4135543 221.1.1.17 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C 0.52 43.0 3.36e-01 97.9% 52.1%
3825377 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.52 43.0 2.41e-01 97.9% 10.5%
3329353 3164.1.1.3 few secondary structure elements › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein › DYW_deaminase 0.52 41.0 3.14e-01 100.0% 68.1%
3446121 109.4.1.3478 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, Eplus_motif, E_motif, TPR_24 0.52 43.0 2.43e-01 97.9% 9.9%
4017526 217.1.1.2 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.52 42.0 2.89e-01 100.0% 24.6%
5069289 2492.1.1.18 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.52 41.0 3.29e-01 100.0% 40.9%
3296178 109.4.1.1476 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, E_motif 0.51 38.0 2.17e-01 93.6% 6.6%