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MH153801.1AWN03419.1PBI_COUNT_98__00096

Bact-Vir

MH153801.1__AWN03419.1__PBI_COUNT_98__00096

Identity

Accession:: MH153801 ↗
Kingdom:: phage

Quality

85.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microbacterium_phage_Count

TaxID: 2182352

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-65

PDB

Domain cluster: representative

CATH (22)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2jbwA01	1.20.1440.110	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase	0.78	58.0	4.76e-01	77.4%	58.3%
4qndA00	1.20.1280.290	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.74	59.0	5.01e-01	85.5%	73.2%
1bgfA00	1.10.532.10	Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain	0.73	52.0	4.12e-01	75.8%	61.3%
5jc3A02	1.20.1320.30	Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 ›	0.72	58.0	4.53e-01	85.5%	42.1%
4yvoA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.72	54.0	4.30e-01	79.0%	42.0%
2c2lA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.71	53.0	4.12e-01	79.0%	61.7%
1tjoB00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.71	57.0	4.04e-01	85.5%	48.6%
1fpoC02	1.20.1280.20	Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain	0.69	62.0	5.47e-01	100.0%	86.8%
1ah7A00	1.10.575.10	Mainly Alpha › Orthogonal Bundle › P1 Nuclease › P1 Nuclease	0.69	61.0	4.11e-01	100.0%	33.9%
1oq4A00	1.10.620.20	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A	0.68	58.0	3.60e-01	93.5%	49.1%
1t3dA01	1.10.3130.10	Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1	0.66	51.0	3.90e-01	83.9%	62.1%
1dd3A01	1.20.5.710	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Single helix bin	0.65	47.0	4.85e-01	79.0%	84.2%
1rqgA04	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.65	53.0	4.00e-01	90.3%	53.0%
3u3iA02	1.20.58.1110	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.65	50.0	4.27e-01	87.1%	69.4%
7kdtA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.62	47.0	2.98e-01	83.9%	88.5%
3zc0D00	1.20.58.2140	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.59	45.0	3.28e-01	85.5%	32.6%
4fm3A00	1.20.1270.390	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.58	53.0	4.50e-01	96.8%	68.4%
2pmrA00	1.20.1270.90	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like	0.58	53.0	4.90e-01	96.8%	89.5%
1e2aA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.58	43.0	3.67e-01	80.6%	79.4%
1cpqA00	1.20.120.10	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562	0.56	50.0	3.87e-01	96.8%	72.9%
2kj8A00	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.55	47.0	3.92e-01	100.0%	54.2%
3ziuA01	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.54	47.0	3.21e-01	100.0%	37.9%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3361330	109.4.1.1279 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long, TPR_24	0.83	62.0	3.71e-01	80.6%	12.8%
4534092	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.80	55.0	3.86e-01	71.0%	32.8%
3532073	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.80	57.0	3.86e-01	74.2%	40.0%
3851149	5.1.5.61 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Frtz	0.80	55.0	5.59e-01	75.8%	73.3%
3974601	601.3.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain	0.77	55.0	4.46e-01	74.2%	52.7%
4582542	192.11.1.1 ↗	alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR	0.77	58.0	5.82e-01	79.0%	95.2%
3364252	109.4.1.1331 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long, E_motif	0.76	48.0	2.98e-01	71.0%	12.5%
3283133	610.4.1.0 ↗	alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain	0.74	59.0	4.76e-01	83.9%	85.5%
4946108	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.66	57.0	4.07e-01	100.0%	40.4%
5030918	632.11.1.1 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF357	0.66	55.0	4.99e-01	88.7%	87.5%
5007277	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.59	56.0	4.96e-01	100.0%	89.4%
3629032	601.4.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains	0.54	48.0	3.49e-01	96.8%	54.5%

D2 high residues 69-188

PDB

Domain cluster: rep: MW677525.1__QXN72353.1__RCSIMONEHASTD_24__00024__D1-108

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01503.23 best	PRA-PH	46.2	6.70e-12	54.2%	60.5%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3craB01	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.82	55.0	6.44e-01	97.5%	95.3%
2yf4F00	1.10.3420.10	Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain	0.81	69.0	6.45e-01	100.0%	74.1%
1yvwA00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.79	57.0	6.46e-01	99.2%	96.7%
3anwA01	1.20.58.1030	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.69	41.0	4.25e-01	80.8%	62.8%
5jajA03	1.20.1320.30	Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 ›	0.58	39.0	3.96e-01	88.3%	70.7%
1hy5B00	1.20.120.260	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain	0.52	32.0	3.21e-01	81.7%	58.7%
3k1hA00	3.30.1120.180	Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076	0.52	37.0	3.85e-01	74.2%	95.7%
3hiuD00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.52	40.0	3.68e-01	80.0%	66.4%
2xi9A03	1.10.150.480	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 ›	0.52	29.0	3.13e-01	75.0%	63.4%
6rv2A00	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.50	41.0	3.25e-01	89.2%	46.9%
2e8gA01	1.20.1440.150	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.50	40.0	3.96e-01	85.0%	94.4%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1290191	159.1.3.1 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › putative NTP pyrophosphohydrolase Exig_1061 › PRA-PH	0.83	72.0	6.56e-01	100.0%	72.3%
4562960	159.1.2.1 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PRA-PH	0.75	57.0	6.11e-01	100.0%	89.5%
3616226	6155.1.1.1 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv	0.69	41.0	4.13e-01	81.7%	58.3%
5023828	159.1.1.1 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG	0.69	48.0	5.67e-01	99.2%	98.9%
3936948	5057.1.1.0 ↗	alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore	0.61	36.0	3.22e-01	73.3%	43.0%
3245192	6155.1.1.1 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv	0.61	33.0	3.84e-01	80.0%	74.1%
2738739	2004.1.1.156 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5	0.60	30.0	3.00e-01	77.5%	43.0%
3508723	6155.1.1.1 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv	0.58	35.0	3.52e-01	80.8%	57.6%
4014274	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	44.0	3.54e-01	85.8%	47.3%
3272035	109.21.1.2 ↗	alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nup96	0.51	45.0	2.89e-01	97.5%	68.5%
4887928	5063.1.1.1 ↗	alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › PSI_PSAK	0.50	29.0	3.75e-01	70.0%	98.6%

D3 medium residues 189-251

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2xqhA03	6.10.250.1980	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.62	56.0	5.54e-01	100.0%	97.0%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3586299	109.4.1.1224 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_DOCK9	0.71	43.0	2.43e-01	71.4%	5.5%
2755218	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.61	51.0	3.51e-01	90.5%	30.1%
3276479	621.1.1.3 ↗	alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB	0.59	47.0	3.32e-01	87.3%	67.8%
3360754	2484.1.1.20 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1	0.52	43.0	3.20e-01	87.3%	41.4%
3693975	186.2.1.1 ↗	alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain › VEFS-Box	0.51	37.0	2.92e-01	77.8%	37.7%
3667014	2003.1.1.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains	0.50	36.0	2.23e-01	82.5%	54.0%
3743565	109.4.1.313 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_N	0.50	38.0	2.36e-01	79.4%	45.0%