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MH153801.1__AWN03453.1__PBI_COUNT_132__00130

Bact-Vir

MH153801.1__AWN03453.1__PBI_COUNT_132__00130

Identity

Accession:
MH153801 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microbacterium_phage_Count

TaxID: 2182352

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 248-375
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ga6A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.68 43.0 5.21e-01 100.0% 98.8%
3ougA00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.57 40.0 4.39e-01 96.9% 88.7%
3czbA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.56 40.0 3.63e-01 100.0% 55.9%
2ki8A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.54 43.0 4.40e-01 100.0% 86.4%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 22.0 3.34e-01 75.8% 100.0%
7xc8A01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.51 41.0 4.40e-01 99.2% 99.1%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5076635 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.66 43.0 5.11e-01 100.0% 97.6%
5028227 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.66 43.0 5.14e-01 99.2% 98.8%
4500954 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.66 37.0 4.61e-01 100.0% 92.0%
4405973 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.66 44.0 5.06e-01 100.0% 92.6%
5069203 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.65 42.0 4.94e-01 100.0% 93.3%
5053341 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.64 43.0 4.77e-01 100.0% 87.0%
4270657 1.1.2.26 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6 0.62 42.0 4.85e-01 100.0% 96.7%
3926811 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.62 45.0 5.05e-01 100.0% 97.0%
3186315 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.60 43.0 4.81e-01 100.0% 95.0%
3391395 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 41.0 4.52e-01 99.2% 90.0%
4200338 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 43.0 4.67e-01 99.2% 91.4%
5042283 208.1.1.56 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › MazE_antitoxin 0.58 41.0 3.16e-01 100.0% 31.1%
3463336 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.58 42.0 4.74e-01 100.0% 98.0%
3343851 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.57 43.0 3.53e-01 100.0% 45.1%
3071125 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.56 41.0 4.35e-01 100.0% 86.1%
3772228 1.1.2.40 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PEX6_vert_N 0.56 41.0 4.13e-01 100.0% 75.4%
3781180 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.55 43.0 4.58e-01 100.0% 95.5%
5019509 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.55 44.0 4.53e-01 100.0% 87.2%
3595821 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.55 22.0 2.68e-01 71.9% 54.4%
4415829 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.54 40.0 4.44e-01 97.7% 98.0%
5051053 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.54 43.0 4.43e-01 100.0% 87.1%
3848951 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 22.0 2.77e-01 71.1% 61.3%
3591362 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.53 42.0 4.54e-01 98.4% 100.0%
3264281 1.1.2.33 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PF29515 0.52 41.0 4.09e-01 100.0% 82.3%
3507298 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.51 39.0 3.41e-01 80.5% 94.9%
3556744 101.1.2.79 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.50 26.0 3.28e-01 96.1% 84.0%
D2 high residues 656-739_752-763
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i6mD00 6.20.420.10 Special › Other non-globular › Factor Xa Inhibitor › 0.52 21.0 2.71e-01 77.1% 56.6%
3lltA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 33.0 2.50e-01 85.4% 25.8%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3537701 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.52 26.0 3.22e-01 71.9% 100.0%
3253864 4096.1.1.1 ↗ a+b two layers › NAP-like › NAP-like › NAP-like › NAP 0.51 39.0 2.92e-01 83.3% 61.2%
D3 medium residues 42-224
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p4wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 30.0 3.94e-01 91.8% 74.8%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.59 31.0 3.94e-01 76.5% 84.4%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3639498 101.1.2.722 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6581, PF28722 0.68 39.0 2.94e-01 71.6% 24.8%
3597631 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 48.0 4.37e-01 74.3% 97.1%
3926827 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.62 44.0 3.00e-01 71.6% 35.4%
3580866 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.58 36.0 4.36e-01 90.7% 94.2%
4117256 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.55 32.0 3.67e-01 82.5% 77.7%
3662896 101.1.1.411 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r2 0.51 30.0 3.49e-01 71.6% 80.8%
D4 medium residues 381-397_460-548
PDB
Domain cluster: rep: AP008983.1__BAE47877.1__CST179__00179__D460-558
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1twfA03 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.86 65.0 6.65e-01 84.0% 81.2%
1qcsA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.79 58.0 6.55e-01 84.0% 98.8%
7eu1A01 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.78 66.0 5.89e-01 88.7% 77.5%
1cz4A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.78 60.0 6.45e-01 84.0% 92.4%
1wlfA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.77 57.0 6.34e-01 84.0% 96.4%
1ynjD04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.76 64.0 5.68e-01 87.7% 87.6%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.71 57.0 5.78e-01 84.0% 93.2%
4avrA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.71 56.0 5.93e-01 83.0% 98.9%
1gsaA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.67 40.0 4.91e-01 84.0% 96.9%
3k5iA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.66 40.0 4.79e-01 86.8% 92.9%
1auvA01 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.65 37.0 4.67e-01 84.0% 98.3%
5d8dD03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.63 39.0 4.70e-01 88.7% 98.5%
3vpbA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.63 39.0 4.74e-01 86.8% 97.1%
1a9xA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.63 39.0 4.65e-01 87.7% 94.3%
5zctA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.62 38.0 4.52e-01 84.0% 95.5%
2pvpA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.62 37.0 4.58e-01 84.0% 98.4%
6dgiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.62 39.0 4.63e-01 84.0% 97.1%
5k2mA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.62 39.0 4.64e-01 88.7% 97.1%
4wd3A02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.61 40.0 4.57e-01 87.7% 93.3%
2i87A03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.57 38.0 4.39e-01 88.7% 97.3%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.54 35.0 4.18e-01 92.5% 97.2%
3wnzA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.53 42.0 4.44e-01 90.6% 96.7%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.53 38.0 3.77e-01 84.0% 69.8%
5eiqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 35.0 3.70e-01 84.0% 79.1%
2xwxA02 3.30.70.2150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 39.0 3.93e-01 81.1% 88.0%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 32.0 3.56e-01 94.3% 83.3%
4ecnA01 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.50 31.0 3.22e-01 77.4% 64.1%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3665832 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.86 70.0 6.91e-01 84.0% 88.2%
3187087 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.85 69.0 6.46e-01 84.0% 88.8%
3966248 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.84 65.0 6.33e-01 87.7% 73.9%
3643011 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.84 68.0 6.25e-01 84.0% 89.2%
3429812 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.82 70.0 6.92e-01 88.7% 88.2%
3206565 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.82 77.0 4.99e-01 100.0% 57.8%
3684523 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.82 67.0 6.25e-01 88.7% 72.0%
3183266 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.81 69.0 6.40e-01 88.7% 89.2%
3357414 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.81 69.0 6.37e-01 88.7% 90.8%
4011478 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.81 69.0 6.56e-01 88.7% 87.5%
3696793 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.81 69.0 6.70e-01 88.7% 91.3%
3670775 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.81 66.0 6.31e-01 88.7% 75.0%
3722909 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.80 68.0 6.20e-01 88.7% 91.1%
3274137 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.79 67.0 6.29e-01 88.7% 87.2%
3596090 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 66.0 6.29e-01 88.7% 76.7%
3509068 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.79 67.0 5.26e-01 88.7% 81.5%
3360997 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.79 67.0 5.91e-01 88.7% 74.5%
4015760 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 67.0 5.30e-01 88.7% 84.1%
3374701 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.79 67.0 5.44e-01 88.7% 79.4%
3836120 275.1.1.1 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.78 66.0 5.23e-01 87.7% 85.6%
1883479 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.78 60.0 6.55e-01 84.0% 94.4%
5053341 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.78 62.0 6.44e-01 84.0% 88.0%
5058903 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.78 66.0 5.26e-01 87.7% 81.1%
4887355 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.78 61.0 5.76e-01 88.7% 69.4%
4943460 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.78 66.0 5.34e-01 88.7% 81.6%
4026183 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.78 66.0 5.71e-01 87.7% 82.0%
5005269 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 62.0 5.62e-01 84.0% 85.7%
4886549 275.1.1.1 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.77 66.0 5.68e-01 88.7% 81.3%
3698542 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.77 66.0 5.13e-01 88.7% 81.0%
5001338 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.77 62.0 6.53e-01 88.7% 92.6%
5081033 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 66.0 5.20e-01 89.6% 78.5%
5032396 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 62.0 6.44e-01 84.0% 91.0%
4129914 1.1.2.31 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2, RNA_pol_Rpb1_3 0.77 65.0 5.02e-01 88.7% 58.6%
5008491 1.1.2.47 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PF27352 0.77 62.0 6.36e-01 84.0% 96.0%
2886100 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 65.0 5.18e-01 88.7% 70.6%
4890084 1.1.2.31 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2, RNA_pol_Rpb1_3 0.77 60.0 5.69e-01 88.7% 70.5%
4995354 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 58.0 6.41e-01 82.1% 97.6%
31 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.77 60.0 6.44e-01 86.8% 94.5%
4585893 1.1.2.22 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N_fung 0.76 61.0 6.16e-01 84.0% 98.1%
1746098 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.76 65.0 5.41e-01 88.7% 76.8%
3186315 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 61.0 6.30e-01 84.0% 95.0%
5042283 208.1.1.56 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › MazE_antitoxin 0.76 63.0 4.39e-01 86.8% 33.4%
4280405 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 59.0 6.35e-01 83.0% 95.6%
3646137 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 64.0 5.01e-01 87.7% 62.0%
5030460 1.1.2.23 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat 0.75 65.0 4.05e-01 89.6% 30.8%
4027672 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.75 61.0 6.16e-01 84.0% 87.6%
3352481 1.1.2.35 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PF26429 0.75 65.0 5.77e-01 91.5% 97.9%
3927447 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.75 61.0 6.01e-01 84.0% 89.1%
3684407 1.1.2.35 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PF26429 0.75 63.0 5.38e-01 89.6% 89.1%
4021338 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 61.0 6.26e-01 84.0% 95.0%
4498374 1.1.2.23 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat 0.75 64.0 4.71e-01 89.6% 56.4%
4261500 1.1.2.22 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N_fung 0.75 59.0 6.11e-01 84.0% 93.0%
4121830 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.74 59.0 6.09e-01 84.0% 95.0%
4243381 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.74 59.0 6.15e-01 84.0% 96.9%
3309021 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.74 59.0 5.87e-01 84.0% 96.4%
4013955 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.73 58.0 5.45e-01 84.0% 95.2%
None — 0.72 58.0 6.18e-01 88.7% 96.8%
3772228 1.1.2.40 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PEX6_vert_N 0.72 57.0 5.28e-01 83.0% 73.8%
3689960 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.72 52.0 5.64e-01 88.7% 87.8%
3735360 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.71 57.0 5.65e-01 84.0% 92.7%
3633323 1.1.2.19 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.70 57.0 5.98e-01 88.7% 95.8%
4954178 1.1.2.23 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat 0.70 65.0 4.10e-01 97.2% 67.3%
3719745 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 56.0 5.59e-01 82.1% 95.3%
3688059 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 58.0 4.96e-01 87.7% 77.6%
3901705 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 55.0 4.87e-01 84.0% 94.0%
3789369 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.68 56.0 5.79e-01 86.8% 97.0%
4928623 1.1.2.16 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.67 54.0 4.34e-01 83.0% 65.8%
3384940 1.1.2.24 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › KWL1 0.67 59.0 5.62e-01 95.3% 90.4%
4131337 1.1.2.12 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PTAC 0.66 56.0 5.74e-01 100.0% 97.0%
4973372 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.65 52.0 4.93e-01 84.0% 95.2%
5078146 1.1.2.16 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.64 52.0 4.86e-01 85.8% 96.9%
5063058 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.62 48.0 4.63e-01 82.1% 100.0%
4106367 379.1.1.1 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 0.55 28.0 3.59e-01 76.4% 94.3%
4122525 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.53 33.0 3.80e-01 84.0% 88.0%
3434909 221.1.1.166 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26130 0.52 34.0 3.90e-01 96.2% 100.0%
3439745 206.1.3.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.52 43.0 2.73e-01 90.6% 20.7%
3980153 1137.1.1.1 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.51 39.0 3.61e-01 100.0% 62.9%
D5 medium residues 561-646
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.77 57.0 5.09e-01 77.9% 75.0%
3zssA02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.76 56.0 5.80e-01 79.1% 83.5%
2k19A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.71 51.0 4.93e-01 75.6% 72.4%
2hz8A00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.71 54.0 4.88e-01 80.2% 77.4%
5zw7A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.70 52.0 4.27e-01 77.9% 79.6%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.70 51.0 5.14e-01 76.7% 85.1%
1fpoC02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.68 50.0 4.88e-01 75.6% 90.1%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.67 47.0 5.15e-01 77.9% 95.5%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.66 47.0 3.77e-01 76.7% 62.9%
2hfiA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.65 51.0 4.51e-01 83.7% 77.2%
3bt5A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.65 48.0 4.03e-01 79.1% 94.0%
8sbeA01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.65 47.0 3.64e-01 76.7% 36.2%
3thxB03 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.62 47.0 3.76e-01 83.7% 48.4%
3cucA00 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.60 49.0 3.53e-01 89.5% 75.6%
2kbwA01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.59 43.0 3.52e-01 75.6% 83.7%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.56 46.0 3.98e-01 89.5% 82.7%
4s3mB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.55 40.0 3.78e-01 77.9% 93.4%
6tqpA01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.53 39.0 3.35e-01 76.7% 52.2%
4n06A02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.52 39.0 2.83e-01 80.2% 67.0%
2lhjA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.52 38.0 3.92e-01 76.7% 85.0%
3rc3A01 1.10.1740.140 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.52 42.0 4.01e-01 90.7% 88.3%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4997929 159.1.1.1 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG 0.81 56.0 5.36e-01 72.1% 69.0%
3867542 3826.1.1.0 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.80 60.0 6.05e-01 77.9% 83.5%
5047397 159.1.1.1 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG 0.80 56.0 5.41e-01 73.3% 68.4%
3970792 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.78 59.0 5.23e-01 79.1% 70.0%
5007466 159.1.2.2 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › MazG 0.76 53.0 5.23e-01 72.1% 71.1%
5058485 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.75 59.0 5.34e-01 83.7% 80.9%
5075878 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.74 56.0 5.85e-01 80.2% 95.0%
4452394 4207.1.2.1 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › Med7 0.73 54.0 4.52e-01 76.7% 53.6%
3350462 5050.1.1.28 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › BT1 0.72 52.0 3.67e-01 76.7% 28.9%
3279221 628.1.1.1 ↗ alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD 0.69 50.0 4.20e-01 76.7% 82.1%
4938195 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.68 53.0 4.34e-01 82.6% 80.6%
4823856 138.1.1.1 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › RFC1 0.68 49.0 4.06e-01 75.6% 75.8%
3286065 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.67 50.0 5.38e-01 79.1% 98.6%
5051429 2002.3.1.3 ↗ a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Glyco_hydro_57 0.67 53.0 3.32e-01 83.7% 61.4%
3614671 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.67 46.0 4.75e-01 70.9% 90.0%
3267005 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.66 49.0 4.57e-01 76.7% 83.8%
4989968 4952.1.1.1 ↗ alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_1 0.66 50.0 4.72e-01 81.4% 91.4%
3972358 150.1.2.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase 0.64 57.0 3.98e-01 100.0% 64.6%
3654776 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.64 46.0 3.89e-01 77.9% 71.0%
4945388 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.63 46.0 3.53e-01 76.7% 36.0%
4169323 4952.1.1.1 ↗ alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_1 0.63 50.0 4.38e-01 88.4% 87.4%
3706915 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.61 45.0 4.80e-01 79.1% 98.6%
3739924 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.58 46.0 4.34e-01 86.0% 80.0%
3913589 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.58 54.0 4.67e-01 100.0% 95.2%
3730130 140.1.1.11 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.53 38.0 2.94e-01 76.7% 53.2%
D6 medium residues 770-885
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s84A02 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.69 48.0 4.32e-01 71.6% 55.4%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.68 45.0 5.19e-01 94.0% 95.1%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 47.0 3.68e-01 72.4% 43.0%
2xokP00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.66 42.0 4.99e-01 87.9% 100.0%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.66 46.0 5.21e-01 71.6% 100.0%
6grjB01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.65 55.0 3.99e-01 90.5% 74.4%
2ivxB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 33.0 3.34e-01 71.6% 47.8%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.64 33.0 3.77e-01 80.2% 65.5%
2v0xA01 1.10.287.3160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 47.0 4.10e-01 75.9% 57.7%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.63 36.0 4.10e-01 79.3% 75.3%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.63 47.0 4.76e-01 87.9% 77.8%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.62 44.0 4.06e-01 72.4% 59.2%
1h7cA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 51.0 5.39e-01 87.1% 100.0%
3cazB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.62 46.0 3.77e-01 77.6% 72.4%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.62 43.0 4.57e-01 75.0% 81.0%
1bf5A01 1.20.1050.20 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain 0.62 53.0 4.72e-01 94.8% 94.6%
3pltA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.61 45.0 3.68e-01 76.7% 66.8%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.61 44.0 4.83e-01 74.1% 93.6%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.61 35.0 4.15e-01 83.6% 85.3%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.61 40.0 4.59e-01 73.3% 89.7%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.61 45.0 4.68e-01 76.7% 87.9%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.61 43.0 4.52e-01 85.3% 82.5%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.60 33.0 3.93e-01 81.9% 79.2%
3onjA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.60 40.0 4.32e-01 78.4% 80.4%
1uruA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.60 45.0 3.68e-01 77.6% 75.1%
3mvpA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 38.0 3.54e-01 79.3% 50.3%
2fcwA00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.59 44.0 4.57e-01 75.9% 84.9%
3ls1A00 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.58 40.0 3.81e-01 90.5% 60.2%
3k17A02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.58 29.0 2.77e-01 75.9% 38.6%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 28.0 3.33e-01 72.4% 66.7%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.58 32.0 3.36e-01 70.7% 56.5%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.58 42.0 4.38e-01 75.0% 93.3%
6xkyA01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.58 47.0 4.02e-01 87.9% 55.6%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.56 41.0 4.56e-01 75.9% 98.9%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.56 42.0 4.34e-01 88.8% 84.1%
2dnxA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 43.0 4.17e-01 82.8% 73.1%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 34.0 4.21e-01 80.2% 100.0%
3zbhA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.56 37.0 4.14e-01 73.3% 87.8%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.55 40.0 4.31e-01 74.1% 89.6%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.55 38.0 4.07e-01 73.3% 82.8%
2dw4A03 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.55 39.0 4.19e-01 75.9% 85.1%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.54 40.0 4.24e-01 76.7% 96.0%
4e40A00 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.53 43.0 3.48e-01 90.5% 80.4%
3wvoC02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.52 37.0 3.62e-01 82.8% 66.2%
4cgkA01 6.10.250.3150 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.52 46.0 3.72e-01 95.7% 85.5%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.51 35.0 3.61e-01 91.4% 74.1%
2gd5A00 6.10.140.1230 Special › Helix non-globular › Helix Hairpins › 0.51 45.0 4.23e-01 96.6% 90.8%
1cnt200 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.51 38.0 3.72e-01 79.3% 92.3%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4029754 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.70 50.0 5.71e-01 88.8% 100.0%
4932707 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 48.0 4.76e-01 75.9% 76.8%
3166260 1.1.7.123 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25885 0.65 46.0 4.40e-01 74.1% 63.8%
4936086 601.19.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.65 48.0 4.14e-01 76.7% 57.2%
4080313 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.64 52.0 4.93e-01 87.9% 87.9%
3556456 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 47.0 3.41e-01 76.7% 61.6%
3932320 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.64 46.0 4.38e-01 75.9% 65.7%
4029359 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.64 52.0 5.05e-01 87.9% 80.6%
3920960 604.8.1.2 ↗ alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo › Mitofilin 0.63 52.0 5.04e-01 87.9% 79.2%
3330802 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.63 47.0 4.26e-01 87.9% 58.4%
4937016 3939.1.1.0 ↗ alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.63 46.0 4.07e-01 75.0% 96.4%
3586533 109.4.1.898 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_leprecan 0.63 51.0 4.18e-01 86.2% 94.8%
3235327 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.63 46.0 3.72e-01 75.9% 95.3%
4007316 3291.1.1.4 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PspA_IM30 0.62 46.0 4.18e-01 76.7% 60.6%
3595707 5086.1.1.118 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › BBS2_hp 0.62 48.0 4.63e-01 80.2% 90.0%
3836427 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.62 45.0 4.89e-01 75.9% 94.0%
3599226 3291.1.1.1 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.62 43.0 3.85e-01 71.6% 54.4%
3236489 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.62 44.0 4.19e-01 89.7% 63.0%
3398929 5041.1.1.32 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › TMEM141 0.62 43.0 4.76e-01 71.6% 92.2%
3969668 3758.2.1.1 ↗ alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB 0.61 51.0 4.06e-01 88.8% 80.0%
3548194 192.2.1.18 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.61 45.0 4.63e-01 75.9% 85.5%
4162727 5086.1.1.12 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Uds1 0.61 46.0 4.28e-01 78.4% 86.9%
4520774 3291.1.1.4 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PspA_IM30 0.61 44.0 3.64e-01 75.9% 44.8%
3197548 3755.2.1.0 ↗ alpha bundles › YscO-like › Flagellar FliJ protein › Flagellar FliJ protein 0.61 49.0 4.52e-01 86.2% 88.7%
3184140 5086.1.1.87 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.60 44.0 4.48e-01 75.9% 85.2%
4157135 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.60 44.0 3.77e-01 75.0% 91.1%
3682641 3291.1.1.1 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.60 43.0 3.74e-01 73.3% 50.9%
3946910 3755.1.1.0 ↗ alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.60 51.0 4.33e-01 90.5% 83.2%
5030588 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.60 45.0 2.89e-01 76.7% 30.1%
3609803 4177.1.1.5 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 0.60 44.0 3.49e-01 76.7% 39.6%
4983118 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.60 44.0 4.82e-01 75.9% 93.7%
4999359 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.60 32.0 3.64e-01 77.6% 67.8%
3977955 601.4.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › TarH 0.58 44.0 4.13e-01 87.1% 64.1%
3987006 5086.1.1.93 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_EMRA 0.58 42.0 3.93e-01 74.1% 62.9%
3590504 3758.1.1.4 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › TelA 0.58 47.0 3.74e-01 87.9% 77.6%
4010479 325.1.7.48 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › PF25885 0.58 41.0 4.01e-01 74.1% 67.7%
3729252 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.57 45.0 4.57e-01 83.6% 97.4%
4507149 4177.1.1.9 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Snx8_BAR_dom 0.56 41.0 3.35e-01 76.7% 84.5%
3853566 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.56 40.0 4.09e-01 87.9% 75.7%
4954895 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.55 39.0 4.44e-01 75.0% 100.0%
3988277 5065.1.1.2 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.54 41.0 3.04e-01 80.2% 66.4%
4034094 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.54 43.0 3.69e-01 86.2% 74.7%
3290543 150.5.1.11 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › T7SS_ESX_EspC 0.52 36.0 3.73e-01 70.7% 85.2%
4946745 1075.1.2.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.51 45.0 3.88e-01 100.0% 96.8%
5060007 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.51 40.0 3.83e-01 84.5% 88.9%
3587045 5065.1.1.2 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.50 43.0 3.21e-01 94.0% 61.7%